Amino acids dansyl chloride

Dansylation is often used for the determination of free and N-terminal amino acids. Dansyl chloride (5-dimethylaminonaphthalene-l-sulfonyl chloride, DNS-C1) reacts with the amino substituent of amino acids to form highly fluorescent derivatives [75,76]. The method is particularly useful for the analysis of trace components due to the high sensitivity of the products. The derivatives are usually separated by TLC on various types of layers. Separations of DNS-amino acids by flat-bed techniques have been reviewed [77]. Separations by column chromatography have been examined on polyamide [78] and Amberlite IRC-SO [79]. Although many variations of the dansylation reaction with amino acids have been reported, the one described below [77] appears to be the most common. 

Experiments were conducted to determine the free amino groups available for reaction with dansyl chloride. Only one faint fluorescent area in the region of dansyl-lysine was observed. No dansyl-ethanolamine was observed. However, if the pol3nner was first treated with 6 N HCl to hydrolyze the amino acids, dansyl amino acids were obtained. Quantitative analysis for ethanolamine from the amino acid analyzer gave 1.3 ethanolamine residues for 2 proline residues. The low solubility of the polymer in aqueous solution may have been the primary factor leading to lack of derivatization of the intact glycopeptide. 

Sodiiun dodecylsulfate, cetyltrimethylam-monium chloride, sodium cholate, -cyclodextrin dansylated amino acids and polycyclic aromatic hydrocarbons > 45-fold 1% in water the greatest enhancement of fluorescence is that of sodium cholate on pyrene [263]... 

Dansyl chloride is the most widely used of the derivatizing reagents. It forms derivatives with primary and secondary amines readily, less rapidly with phenols and imidazoles, and very slowly with alcohols. The reaction medium is usually an aqueous-organic sixture (e.g., 1 1 acetone-water) adjusted to a pH of 9.5-10. Dansyl chloride has two major application areas. It is used to determine small amounts of amines, amino acids and phenols, as... 

For the sulfonation step, amino acids were added as their sodium salts. The reactions were carried out in cold aqueous solution, in which the sulfonamides were immediately precipitated. By the same method dansylations of amino acids could be accomplished with N-( 1 -dimethylaminonaphthalene-5-sulfonyl)-Af -methylimidazolium chloride ... 

The Af-dansylated amino acid (e.g., glycine, leucine, proline) exhibits a yellow fluorescence. The sensitivity of detection for amino acids by this method is about 10 9 mol of amino acid. The advantage of this prodecure in comparison with that using dansyl chloride is the fact that it can be carried out in homogenous aqueous solution without addition of a cosolvent. 191... 

The amine-reactive 5-(dimethylamino)naphthalene-l-sulfonyl (dansyl) chloride 28 [80] and related fluorophores [81, 82], as well as the 5-((2 aminoethyl)amino) naphthalene-1-sulfonic acid (EDANS) 29, are included in the naphthalene fluorophore family. Derivatives of the latter, such as compound 30, exhibit a Lm.ix/ Lem 336/520 nm, molar absorptivity (e) of 6.1 x 103 M-1 cm-1, and a fluorescent quantum yield of 0.27 in water [83], The use of EDANS is particularly interesting in FRET experiments [84, 85]. Furthermore, 4-amino-3,6-disulfonylnaphthalimides (e.g., Lucifer yellow 31), associated to a longer absorption (Lmax 428 nm) [86] are suitable polar tracers [87]. 

Enhancements in the sensitivity with which amino acids containing a primary amine group can be determined have been achieved by derivatization. Chen and Sato [37] reported derivatization with divinyl-sulfone-reduced limits of detection by several orders of magnitude, while Lee and Nieman [38] reported derivatization with dansyl-chloride-reduced limits of detection by a factor of three. 

Amino acids TCP0-H202-Dansyl chloride Borate buffer (pH 8.9)... 

Most HPLC instruments monitor sample elution via ultraviolet (UV) light absorption, so the technique is most useful for molecules that absorb UV. Pure amino acids generally do not absorb UV therefore, they normally must be chemically derivatized (structurally altered) before HPLC analysis is possible. The need to derivatize increases the complexity of the methods. Examples of derivatizing agents include o-phthaldehyde, dansyl chloride, and phenylisothiocyanate. Peptides, proteins, amino acids cleaved from polypeptide chains, nucleotides, and nucleic acid fragments all absorb UV, so derivatization is not required for these molecules. 

Dansyl chloride (dimethylaminonaphthalene-5-sulphonyl chloride) will react with free amino groups in alkaline solution (pH 9.5-10.5) to form strongly fluorescent derivatives (Figure 10.14). This method can also be used in combination with chromatographic procedures for amino acid identification in a similar manner to the FDNB reagent but shows an approximately 100-fold increase in sensitivity. This makes it applicable to less than 1 nmol of material and more amenable for use with very small amounts of amino acids liberated after hydrolysis of peptides. The dansyl amino acids are also very resistant to hydrolysis and they can be located easily after chromatographic separation by viewing under an ultraviolet lamp see Procedure 10.1. 

Figure 10.14 The reaction of dansyl chloride with compounds containing a free amino group. At an alkaline pH, the reaction results in the formation of fluorescent derivatives of free amino acids and the N-tenninal amino acid residue of peptides.

Dansyl chloride reacts with the carboxyl group of an amino acid BECAUSE... 

A comparative study was made of the RP-HPLC analysis of free amino acids in physiological concentrations in biological fluids, with pre-column derivatization by one of the four major reagents o-phthalaldehyde (73) in the presence of 2-mercaptoethanol, 9-fluorenylmethyl chloroformate (90), dansyl chloride (92) and phenyl isothiocyanate (97, R = Ph) (these reagents are discussed separately below). Duration of the analysis was 13-40 min. Sensitivity with the latter reagent was inferior to the other three however, its use is convenient in clinical analysis, where sample availability is rarely a problem. The derivatives of 73 were unstable and required automatized derivatization lines. Only 92 allowed reliable quantation of cystine. All four HPLC methods compared favorably with the conventional ion-exchange amino acid analysis188. 

Latent fingerprints on paper have been revealed by combining the amino acids present with reagents such as ninhydrin (see 37), dansyl chloride (92), fluorescamine (154), 4-chloro-7-nitrobenzofurazan (127a) and o-phthalaldehyde (see reaction 7). To avoid some problems encountered with these reagents it was proposed to use 1,8-diazafluorenone (155), leading to the formation of highly fluorescent ylides (156)349. 

Suitably protected amino acids (112) (cysteine, serine, and lysine) have been added via the side-chain heteroatom (S, O, and N, respectively) to conjugated alkynones, alkynoic ester and alkynoic amide (113). The expected heterosubstituted vinyl product (114) was formed in each case, mainly as the ii-isomer. In an accompanying paper, this type of addition was applied to the derivatives of fluorescein, 7-hydroxycoumarin, Sudan 1, and dansyl chloride with linker arms containing a conjugated terminal alkyne. 

Extrinsic fluorescence is used whenever the natural fluorescence of a macromolecule is inadequate for accurate fluorescence measurement. In this case, one can attach a fluorescent reporter group by using the reactive isocyanate or isothiocyanate derivatives of fluorescein or rhodamine, two intensely fluorescent molecules. One can covalently also label a protein s a- and e-amino groups with dansyl chloride (/.e., A,A-dimethylaminonaphtha-lenesulfonyl chloride). Another useful reagent is 8-ani-lino-l-naphthalenesulfonic acid (abbreviated ANS). This compound is bound noncovalently by hydrophobic interactions in aqueous solutions, ANS is only very fluorescent, but upon binding within an apolar environment, the quantum yield of ANS becomes about 100 times greater. 

Various procedures are used to analyze protein primary structure. Several protocols are available to label and identify the amino-terminal amino acid residue (Fig. 3-25a). Sanger developed the reagent l-fluoro-2,4-dinitrobenzene (FDNB) for this purpose other reagents used to label the amino-terminal residue, dansyl chloride and dabsyl chloride, yield derivatives that are more easily detectable than the dinitrophenyl derivatives. After the amino-terminal residue is labeled with one of these reagents, the polypeptide is hydrolyzed to its constituent amino acids and the labeled amino acid is identified. Because the hydrolysis stage destroys the polypeptide, this procedure cannot be used to sequence a polypeptide beyond its amino-terminal residue. However, it can help determine the number of chemically distinct polypeptides in a protein, provided each has a different amino-terminal residue. For example, two residues—Phe and Gly—would be labeled if insulin (Fig. 3-24) were subjected to this procedure. 

Another useful reaction of amino side chains is that with dansyl chloride (Eq. 3-29). Many lysine derivatives can be determined quantitatively by amino acid analysis.280... 

Period 1 Part A—Begin acid hydrolysis of peptide. Part B—Complete dansyl chloride reaction and begin acid hydrolysis of dansyl peptide. Part A.2—if applicable, prepare paper chromatogram by applying standard amino acids. 

Draw a picture in your notebook of the polyamide thin-layer plate exposed under UV light after each of the two or three solvent developments. These pictures should look similar to Figure E2.7. Three fluorescent areas should be evident after solvent 2 however, better separation is achieved by solvent 3. A blue fluorescent area at the bottom of the plate is dansic acid (DNS-OH), which is a hydrolysis product of dansyl chloride. A blue-green fluorescent spot about one-third to one-half up the plate is dansyl amide (DNS-NH2), which is produced by reaction of dansyl chloride with ammonia. A third spot, which usually fluoresces green, is the dansyl derivative of the NH2-terminus amino acid. Note the positions of the standard dansyl amino acids and compare with the unknown. What is the identity of the NH2-terminal amino acid Are any other fluorescent spots evident on the plate Using polarity or nonpolarity, try to explain the position of each molecule on the thin-layer plate. 

A related and more sensitive method makes a sulfonamide of the terminal NH2 group with a reagent called dansyl chloride. As with 2,4-dinitrofluorobenzene, the peptide must be destroyed by hydrolysis to release the N-sulfonated amino acid, which can be identified spectroscopically in microgram amounts ... 

Dansyl chloride and phenylisothiocyanate (PITC) are the derivatizating agents most used in UV detection. Dansyl chloride reacts with the primary and secondary amino groups of peptides in a basic medium (pH 9.5), forming dansylated derivatives that are very stable to hydrolysis but are photosensitive. The derivatives are detectable in UV at 254 nm and by fluorescence. Dansyl sulfonic acid is formed as a by-product of the reaction, and excess reagent reacts with the dansyl derivatives to form dansyl amide the conditions of derivatization must therefore be optimized in order to avoid the formation of such by-products to the extent possible. The conditions of the reaction with dansyl chloride and of the separation of the derivatives thus formed have been thoroughly studied (83,84). Martin et al. (85) carried out derivatization using an excess concentration of dansyl chloride of 5 -10-fold in a basic medium (lithium carbonate, pH 9.5) in darkness for 1 h. 

Dansyl chloride has been widely utilized in peptide analyses to determine the N-terminal amino acid (60,86). Mendez et al. (87) suggested that derivatization of the peptides with dansyl... 

Polypeptide chain end-group analysis, (a) Amino-terminal group identification. A more sensitive method, the dansyl chloride method, is described in Methods of Biochemical Analysis 3B. (b) Carboxyl-terminal group identification. Identification of this amino acid is considerably more difficult. 

The dansyl chloride method provides an alternative to the Sanger method for N-terminal amino acid determination. Because it is considerably more sensitive than the Sanger method, it has become the method of choice. The reaction is... 

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