Amino acid racemases

Several hundred tons of L-methionine per year are produced by enzymatic conversion in an enzyme membrane reactor. An alternative approach is dynamic resolution, where the unconverted enantiomer is racemized in situ. Starting from racemic /V-acetyl-amino acid, the enantioselective L-acylase is used in combination with an TV-acyl-amino acid racemase to enable nearly total conversion of the substrate. 

A/-Carbamoylase Combined with A/-Acyi Amino Acid Racemase to Produce L-Homophenyiaianine... 

In Section 5.03.6.2, a stereoselective synthesis of L-homophenylalanine from the racemic AAacetylated amino acid is described. The authors, however, found that substrate solubility limited the utility of this procedure. Having found an L-N-carbamoylase in Bacillus kaustophilus, they introduced the gene for this enzyme together with that for the N-acyl amino acid racemase from D. radiodurans into E. coli for coexpression. These cells, permeabilized with 0.5% toluene, were able to deliver L-homophenylalanine in 99% yield and were able to be used for multiple reaction cycles. 

The reversal of this process could potentially occur with reprotonation from either face of the C=N double bond, and a mixture of aldimines would result, leading to generation of a racemic amino acid. This accounts for the mode of action of PLP-dependent amino acid racemase enzymes. Of course, the enzyme controls removal and supply of protons this is not a random event. One important example of this reaction is alanine racemase, employed by bacteria to convert L-alanine into o-alanine for cell-wall synthesis (see Box 13.12). 

AMINO ACID RACEMASE Amino adds, peptides proteins, BIOCHEMICAL NOMENCLATURE AMINO ACID TURNOVER KINETICS AMINOACYLASE AMINOACYL-tRNA HYDROLASE Aminoacyl-tRNA synthetase,... 

Among the numerous enzymes that utilize pyridoxal phosphate (PLP) as cofactor, the amino acid racemases, amino acid decarboxylases (e.g., aromatic amino acids, ornithine, glutamic acid), aminotransferases (y-aminobutyrate transaminase), and a-oxamine synthases, have been the main targets in the search for fluorinated mechanism-based inhibitors. Pharmaceutical companies have played a very active role in this promising research (control of the metabolism of amino acids and neuroamines is very important at the physiological level). 

T Although D-amino acids do not generally occur in proteins, they do serve some special functions in the structure of bacterial cell walls and peptide antibiotics. Bacterial peptidoglycans (see Fig. 20-23) contain both D-alanine and D-glutamate. D-Amino acids arise directly from the l isomers by the action of amino acid racemases, which have pyridoxal phosphate as cofactor (see Fig. 18-6). Amino acid racemization is uniquely important to bacterial metabolism, and enzymes such as... 

A number of other racemases and epimerases may function by similar mechanisms. While some amino acid racemases depend upon pyridoxal phosphate (Chapter 14), several others function without this coenzyme. These include racemases for aspartate,113 glutamate,114-1153 proline, phenylalanine,116 and diamino-pimelate epimerase.117 Some spiders are able to interconvert d and l forms of amino acid residues in intact polypeptide chains.118119... 

H Brueckner, P Jaek, M Langer, H Godel. Liquid chromatographic determination of D-amino acids in cheese and cow milk. Implication of starter cultures, amino acid racemases, and rumen microorganisms on formation, and nutritional considerations. Amino Acids 2 271-284, 1992. 

The alanine racemization catalyzed by alanine racemase is considered to be initiated by the transaldimination (Fig. 8.5).26) In this step, PLP bound to the active-site lysine residue forms the external Schiff base with a substrate alanine (Fig. 8.5, 1). The following a-proton abstraction produces the resonance-stabilized carbanion intermediates (Fig. 8.5, 2). If the reprotonation occurs on the opposite face of the substrate-PLP complex on which the proton-abstraction proceeds, the antipodal aldimine is formed (Fig. 8.5,3). The subsequent hydrolysis of the aldimine complex gives the isomerized alanine and PLP-form racemase. The random return of hydrogen to the carbanion intermediate is the distinguishing feature that differentiates racemization from reactions catalyzed by other pyridoxal enzymes such as transaminases. Transaminases catalyze the transfer of amino group between amino acid and keto acid, and the reaction is initiated by the transaldimination, followed by the a-proton abstraction from the substrate-PLP aldimine to form a resonance-stabilized carbanion. This step is common to racemases and transaminases. However, in the transamination the abstracted proton is then tranferred to C4 carbon of PLP in a highly stereospecific manner The re-protonation occurs on the same face of the PLP-substrate aldimine on which the a-proton is abstracted. With only a few exceptions,27,28) each step of pyridoxal enzymes-catalyzed reaction proceeds on only one side of the planar PLP-substrate complex. However, in the amino acid racemase... 

The one-base mechanism is characterized by the retention of the substrate-derived proton in the product (internal retum).30) With this criterion, reactions catalyzed by a-amino-c-caprolactam racemase,323 amino acid racemase of broad specificity from Pseudomonas striata333 have been considered to proceed through the one-base mechanism. However, such internal returns were not observed in the reactions of alanine racemases from K coli B,33) B. stearothermophilus,263 and S. typhirmaium (DadB and /1/r).263 The internal return should not be observed in the two-base mechanism, because the base catalyzing the protonation to the intermediate probably obtains the proton from the solvent. But the failure of the observation of the internal return can be also explained by the single-base mechanism in which exchange of the proton abstracted from the substrate a-carbon with the solvent is much faster than its transfer to the a-carbanion. Therefore, lack of the internal return does not directly indicate the two-base mechanism of the alanine racemase reaction. 

Another Variation on the Theme Does N-acyl Amino Acid Racemase Represent Evolution in Action ... 

Of the individual members of the enolase superfamily so far determined to exhibit different overall functions, only one, A-acyl amino acid racemase (NAAAR) (Tokuyama and Hatano, 1995a Tokuyama and... 

Amino acid racemases are important for bacteria because they need D-alanine in the biosynthesis of cell walls. These enzymes require pyridoxal as the active cofactor. A racemization reaction starts with the aldimine complex between pyridoxal and an a-amino acid (Scheme 2.4). Deprotonation occurs at the a-carbon of amino acid, due to the electron-sink effect of pyridoxal. Reprotonation of the quinonoid intermediate at the opposite side provides the desired product (pathway a in Scheme 2.4). However, reprotonation may also take place at the C4 of pyridoxal (pathway b in Scheme 2.4). This kills the catalyst because one of its product, pyridoxamine, can no longer racemize an amino acid. 

A straightforward approach to avoid low yields is to perform the reaction as a dynamic kinetic resolution. Racemisation can be achieved chemically [33] or enzymatically, indeed a number of N-acyl amino acid racemases have been described and it has been demonstrated that they could be employed together with the l-N-acyl amino acylase for the production of optically pure methionine [81]. 

For several reasons a-amino acids are ideal substrates for deracemization methods. They racemize easily by base catalysis under a number of conditions and they are racemized in Nature by the intervention of specific amino acid racemases. They are also recognized as substrates by oxidative enzymes to give the corresponding oxo-acids, in turn substrates for amino transferases and amino acid dehydrogenases. Several industrial preparations of L- and D-amino acids are based on processes of deracemization [26] or of separate two-steps resolution-racemization [27]. 

Several inventive procedures have been used for overcoming these difficulties, offering interesting multistep enzyme-catalyzed reactions for deracemization of amino acids. The requirement of an amino donor of D-configuration can be solved by its in situ generation from the L-form by using an amino acid racemase. 

Enzymatic Kinetic Resolution of N-Acyl Amino Acids Coupled with Racemization by N-Acyl Amino Acid Racemase Acylases are enzymes hydrolysing the N-acetyl derivatives of amino acids. They require the free carboxylate for activity and have long been used for the kinetic resolution of amino acids. The unreacted enantiomer is usually racemized in a separate step by treatment with acetic anhydride. While acylases from hog kidney have an L-specificity, bacterial acylases with L- and D-specificity of various origins have been isolated and used for the kinetic resolution of N-acetyl amino acids. An industrial process for the production of L-Met and other proteinogenic and non-proteinogenic L-amino acids such as L-Val, L-Phe, L-Norval, or L-aminobutyric acid has been established. Currently, several hundred tons per year of L-methionine are produced by this enzymatic conversion using an enzyme membrane reactor [46]. 

A variety of amino acid racemases have been identified in bacteria, archaea, and eukaryotes. They are dassified into two groups pyridoxal 5 -phosphate (PLP) -dependent and -independent enzymes. Therefore, racemization can be achieved via two mechanisms through a chiraUy unstable Schiff base intermediate with an aromatic aldehyde serving as co-factor PLP (Scheme 13.22a) and by a two-base mechanism without co-factor (Scheme 13.22b). 

Scheme 13.22 Amino acid racemization by (a) PLP-dependent alanine racemase and (b) PLP-independent a-amino acid racemase.

Additional Racemase Activities Further useful amino acid racemases are [62] phenylalanine racemase (EG 5.1.1.11), the only racemase that requires ATP to activate the substrate, protine racemase (EC 5.1.1.4) from Clostridium stricklandii, and amino add racemase (EC 5.1.1.10) from Pseudomonas putida. It shows a... 

Amino Acid Racemases and Epimerases Elijah Adams... 

Amino acid racemases have long been known to be important in bacterial metabolism, because several u-amino acids are required for the synthesis of cell wall mucopolysaccharides. u-Serine is found in relatively large amounts in mammalian brain, where it acts as an agonist of the N-methyl-n-aspartate (NMDA) glutamate receptor. Serine racemase has been purified from rat brain and cloned fromhuman brain (Wolosker et al., 1999 De Miranda et al., 2000). 

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