A-subunits

The Fe-N mode is at 222 in the R state and 207 cnY in the T state for the a subunits, but only shifted to 218 T state for the (3 subunits. This is consistent with the interpretation that the Fe-imidazole interations are weakened more in the T state of the a subunits than p subunits. Time-resolved resonance Raman studies have shown that the R T switch is complete on a 10 ps tuuescale [38]. Finally, UV excitation of the aromatic protein side chains yields... 

Figure B2.1.7 Transient hole-burned speetra obtained at room temperature with a tetrapyrrole-eontaining light-harvesting protein subunit, the a subunit of C-phyeoeyanin. Top fluoreseenee and absorption speetra of the sample superimposed with die speetnuu of the 80 fs pump pulses used in the experiment, whieh were obtained from an amplified CPM dye laser operating at 620 mn. Bottom absorption-diflferenee speetra obtained at a series of probe time delays.

Figure B2.1.10 Stimulated photon-echo peak-shift (3PEPS) signals. Top pulse sequence and iuterpulse delays t and T. Bottom echo signals scaimed as a fiinction of delay t at tluee different population periods T, obtained with samples of a tetrapyrrole-containing light-harvesting protein subunit, the a subunit of C-phycocyanin.

Riter R E, Edington M D and Beck W F 1996 Protein-matrix solvation dynamics in a subunit of C-phycocyanin J. Phys. Chem. 100 14 198-205... 

A critical component of the G-protein effector cascade is the hydrolysis of GTP by the activated a-subunit (GTPase). This provides not only a component of the amplification process of the G-protein cascade (63) but also serves to provide further measures of dmg efficacy. Additionally, the scheme of Figure 10 indicates that the coupling process also depends on the stoichiometry of receptors and G-proteins. A reduction in receptor number should diminish the efficacy of coupling and thus reduce dmg efficacy. This is seen in Figure 11, which indicates that the abiUty of the muscarinic dmg carbachol [51 -83-2] to inhibit cAMP formation and to stimulate inositol triphosphate, IP, formation yields different dose—response curves, and that after receptor removal by irreversible alkylation, carbachol becomes a partial agonist (68). 

Pseudohypoparathyroidism is characterized by end-organ resistance to parathyroid hormone (98,108). This disease takes various forms, including Albright s hereditary osteodystrophy, which has unusual physical features and a generalized resistance to G-protein-linked hormones that function through cAMP as a second messenger. This defect is associated with a deficiency in the levels of the a-subunit of (109). Because this defect may be generalized, such patients also have olfactory dysfunction (110). 

During the isolation of inhibin from foUicular fluid, some chromatographic fractions stimulated FSH release from cultured anterior pituitary cells, suggesting the existence of FSH releasing proteins (FRPs). Two FRPs, given the generic term activins, were subsequentiy isolated (131,132). One is composed of two disulfide-finked P-A subunits (activin A) the other consists of similarly finked P-A and P-B subunits (activin AB). 

AE Garcia, JG Harman. Simulations of CRP (cAMP)2 in noncrystalhne environments show a subunit transition from the open to the closed conformation. Protein Sci 5 62-71, 1996. 

Lambright, D.G., et al. Structural determinants for activation of the a-subunit of heterotrimeric G protein. Nature 369 621-628, 1994. 

In the T = 4 structure there are 240 subunits (4 x 60) in four different environments, A, B, C, and D, in the asymmetric unit. The A subunits interact around the fivefold axes, and the D subunits around the threefold axes (Figure 16.7). The B and C subunits are arranged so that two copies of each interact around the twofold axes in addition to two D subunits. For a T = 4 structure the twofold axes thus form pseudosixfold axes. The A, B, and C subunits interact around pseudothreefold axes clustered around the fivefold axes. There are 60 such pseudothreefold axes. The T = 4 structure therefore has a total of 80 threefold axes 20 with strict icosahedral symmetry and 60 with pseudosymmetry. 

The asymmetric unit contains one copy each of the subunits VPl, VP2, VP3, and VP4. VP4 is buried inside the shell and does not reach the surface. The arrangement of VPl, VP2, and VP3 on the surface of the capsid is shown in Figure 16.12a. These three different polypeptide chains build up the virus shell in a way that is analogous to that of the three different conformations A, C, and B of the same polypeptide chain in tomato bushy stunt virus. The viral coat assembles from 12 compact aggregates, or pen tamers, which contain five of each of the coat proteins. The contours of the outward-facing surfaces of the subunits give to each pentamer the shape of a molecular mountain the VPl subunits, which correspond to the A subunits in T = 3 plant viruses, cluster at the peak of the mountain VP2 and VP3 alternate around the foot and VP4 provides the foundation. The amino termini of the five VP3 subunits of the pentamer intertwine around the fivefold axis in the interior of the virion to form a p stmcture that stabilizes the pentamer and in addition interacts with VP4. 

Structural symmetry, either in a target molecule or in a subunit derived from it by antithetic dissection, can usually be exploited to reduce the length or complexity of a synthesis. 

Many proteins consist of two or more interacting polypeptide chains of characteristic tertiary structure, each of which is commonly referred to as a subunit of the protein. Subunit organization constitutes another level in the hierarchy of protein structure, defined as the protein s quaternary (4°) structure (Figure 5.10). Questions of quaternary structure address the various kinds of subunits within a protein molecule, the number of each, and the ways in which they interact with one another. 

Oligomeric enzymes may also carry out different but related reactions on different subunits. Thus, tryptophan synthase is a tetramer consisting of pairs of different subunits, Purified a-subunits catalyze the following reaction ... 

Indole, the product of the a-reaction and the reactant for the /3-reaction, is passed directly from the a-subunit to the /3-subunit and cannot be detected as a free intermediate. 

Myristic acid may be linked via an amide bond to the a-amino group of the N-terminal glycine residue of selected proteins (Figure 9.18). The reaction is referred to as A -myristoylation and is catalyzed by myristoyl—CoAtprolein N-myris-toyltransferase, known simply as NMT. A -Myristoyl-anchored proteins include the catalytic subunit of cAMP-dependent protein kinase, the ppSff tyrosine kinase, the phosphatase known as calcineurin B, the a-subunit of G proteins (involved in GTP-dependent transmembrane signaling events), and the gag proteins of certain retroviruses, including the FHV-l virus that causes AIDS. 

The Na - and K -dependent ATPase comprises two subunits, an a-subunit of 1016 residues (120 kD) and a 35-kD /3-subunit. The sodium pump actively... 

The hormonal stimulation of adenylyl cyclase is effected by a transmembrane signaling pathway consisting of three components, all membrane-associated. Binding of hormone to the external surface of a hormone receptor causes a conformational change in this transmembrane protein, which in turn stimulates a GTP-binding protein (abbreviated G protein). G proteins are heterotrimeric proteins consisting of a- (45-47 kD), /3- (35 kD), and y- (7-9 kD) subunits. The a-subunit binds GDP or GTP and has an intrinsic, slow... 

ATP synthase actually consists of two principal complexes. The spheres observed in electron micrographs make up the Fj unit, which catalyzes ATP synthesis. These Fj spheres are attached to an integral membrane protein aggregate called the Fq unit. Fj consists of five polypeptide chains named a, j3, y, 8, and e, with a subunit stoichiometry ajjSaySe (Table 21.3). Fq consists of three hydrophobic subunits denoted by a, b, and c, with an apparent stoichiometry of ajbgCg.ig- Fq forms the transmembrane pore or channel through which protons move to drive ATP synthesis. The a, j3, y, 8, and e subunits of Fj contain 510, 482, 272, 146, and 50 amino acids, respectively, with a total molecular mass... 

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