X crystal structure

Shao, H., He, X., Achnine, L., Blount, J.W., Dixon, R.A. and Wang, X., Crystal structures of a multifunctional triterpene/flavonoid glycosyltransferase from Medicago truncatula. The Plant Cell, 2005, 17, 3141-3154. 

Blaszczyk, J. Li, Y Yan, H. Ji, X. Crystal structure of unligated guanylate kinase from yeast reveals GMP-induced conformational changes. J. Mol. Biol., 307, 247-257 (2001)... 

Zhang X, Zhou L, Cheng X. Crystal structure of the conserved core of protein arginine methyltransferase PRMT3. EMBO J. 2000 19 3509-3519. 

Formula Color m.p. [X] Crystal structure and lattice constants A Solubility in water References... 

Rayner, J.H. Powell. H.M. Strueture of molecular compounds. Part X. Crystal structure of the eompound of benzene with an ammonia-niekel eyanide complex. 1952.319-328. 

Laue pattern The symmetrical array of spots obtained on a photographic plate exposed to a non-homogeneous beam of X-rays after its passage through a crystal. The patterns constitute the earliest, although one of the most difficult, methods of investigating crystal structure by means of X-rays. 

Calculate the surface energy at 0 K of (100) planes of radon, given that its energy of vaporization is 35 x 10 erg/atom and that the crystal radius of the radon atom is 2.5 A. The crystal structure may be taken to be the same as for other rare gases. You may draw on the results of calculations for other rare gases. 

Fig. VIII-8. Surface structures (a) (1 x 1) structure on the (100) surface of a FCC crystal (from Ref. 76) (b) C(2 x 1) surface structure on the (100) surface of a FCC ciystal (from Ref. 76). In both cases the unit cell is indicated with heavy lines, and the atoms in the second layer with pluses. In (b) the shaded circles mark shifted atoms. (See also Ref. 77.)...

Knowing the lattice is usually not sufficient to reconstruct the crystal structure. A knowledge of the vectors (a, b, c) does not specify the positions of the atoms within the unit cell. The positions of the atoms withm the unit cell is given by a set of vectors i., = 1, 2, 3... u where n is the number of atoms in the unit cell. The set of vectors, x., is called the basis. For simple elemental structures, the unit cell may contain only one atom. The lattice sites in this case can be chosen to correspond to the atomic sites, and no basis exists. 

Diederich F, Jonas U, Gramlich V, Herrmann A, Ringsdorf H and Thilgen C 1993 Synthesis of a fullerene derivative of benzo[18]crown-6 by Diels-Alder reaction complexation ability, amphiphilic properties, and x-ray crystal structure of a dimethoxy-1,9-(methano[1, 2]benzomethano)fullerene[60] benzene clathrate Helv. Chim. Acta 76 2445-53... 

Bode, W., Papamokos, E., Musil, D. The high-resolution X-ray crystal structure of the complex formed between subtilisin Carlsberg and eglin c, an elastase inhibitor from the leech Hirudo medicinalis. Eur. J. Biochem. 166 (1987) 673-692... 

The structure of the metallocene cation energy minimised with the Car-Parrinello method agrees well with the experimentally obtained crystal structures of related complexes. Typical features of the structure as obtained from X-ray diffraction on crystals of very similar neutral complexes (e.g., the dichlorides), such as small differences in distances between C atoms within a cyclopentadienyl (Cp) ring, as well as differences in distances between the C atoms of the Cp ring and the Zr atom, were revealed from the simulations. 

A crystal is a solid with a periodic lattice of microscopic components. This arrangement of atoms is determined primarily by X-ray structure analysis. The smallest unit, called the unit cell, defines the complete crystal, including its symmetry. Characteristic crystallographic 3D structures are available in the fields of inorganic, organic, and organometallic compounds, macromolecules, such as proteins and nucleic adds. 

The two major databases containing information obtained from X-ray structure analysis of small molecules are the Cambridge Structural Database (CSD) [25] and the Inorganic Crystal Structure Database (ICSD) [26] both are available as in-house versions. CSD provides access to organic and organometallic structures (mainly X-ray structures, with some structures from neutron diffraction), data which are mostly unpublished. The ICSD contains inorganic structures. 

All of these crystal structures have been analyzed using X-ray or neutron diffraction... 

The Cambridge Structural Database (C5D) and the Inorganic Crystal Structure Database (ICSD) contain information obtained from X-ray structure analysis. 

Traditionally, least-squares methods have been used to refine protein crystal structures. In this method, a set of simultaneous equations is set up whose solutions correspond to a minimum of the R factor with respect to each of the atomic coordinates. Least-squares refinement requires an N x N matrix to be inverted, where N is the number of parameters. It is usually necessary to examine an evolving model visually every few cycles of the refinement to check that the structure looks reasonable. During visual examination it may be necessary to alter a model to give a better fit to the electron density and prevent the refinement falling into an incorrect local minimum. X-ray refinement is time consuming, requires substantial human involvement and is a skill which usually takes several years to acquire. 

Gavezzotti A and G Filippini 1996. Computer Prediction of Organic Crystal Structures Using Partial X-ray Diffraction Data, journal of the American Chemical Society 118 7153-7157. 

Frazao C, C Topham, V Dhanaraj and T L Blundell 1994. Comparative Modelling of Human Rer Retrospective Evaluation of the Model with Respect to the X-ray Crystal Structure, Pure and A Chemistry 66 43-50. 

D, H W Hoeffken, D Crosse, J Stuerzebecher, P D Martin, B F P Edwards and W Bode 1992. Refined 2.3 Angstroms X-Ray Crystal Structure of Bovine Thrombin Complexes Formed witli he 3 Benzamidine and Arginine-Based Thrombin Inhibitors NAPAP, 4-TAPAP and MQPA A Starting Point for Improving Antithrombotics. Journal of Molecular Biology 226 1085-1099. 

D, J Sturzebecher and WBode 1991. Geometry of Binding of the N-Alpha-Tosylated Piperidides of weffl-Amidino-Phenylalanine, Para Amidino-Phenylalanine and para-Guanidino-Phenylalanine to Thrombin and Trypsin - X-ray Crystal Structures of Their Trypsin Complexes and Modeling of their Thrombin Complexes. FEBS Letters 287 133-138. 

An impressive example of the application of structure-based methods was the design of a inhibitor of the HIV protease by a group of scientists at DuPont Merck [Lam et al. 1994 This enzyme is crucial to the replication of the HIV virus, and inhibitors have bee shown to have therapeutic value as components of anti-AIDS treatment regimes. The star1 ing point for their work was a series of X-ray crystal structures of the enzyme with number of inhibitors boimd. Their objective was to discover potent, novel leads whid were orally available. Many of the previously reported inhibitors of this enzyme possessei substantial peptide character, and so were biologically unstable, poorly absorbed am rapidly metabolised. 

Crystal can compute a number of properties, such as Mulliken population analysis, electron density, multipoles. X-ray structure factors, electrostatic potential, band structures, Fermi contact densities, hyperfine tensors, DOS, electron momentum distribution, and Compton profiles. 

An additional problem is encountered when the isolated solid is non-stoichiometric. For example, precipitating Mn + as Mn(OH)2, followed by heating to produce the oxide, frequently produces a solid with a stoichiometry of MnO ) where x varies between 1 and 2. In this case the nonstoichiometric product results from the formation of a mixture of several oxides that differ in the oxidation state of manganese. Other nonstoichiometric compounds form as a result of lattice defects in the crystal structure. ... 

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