Energy minimisation

The structure of the metallocene cation energy minimised with the Car-Parrinello method agrees well with the experimentally obtained crystal structures of related complexes. Typical features of the structure as obtained from X-ray diffraction on crystals of very similar neutral complexes (e.g., the dichlorides), such as small differences in distances between C atoms within a cyclopentadienyl (Cp) ring, as well as differences in distances between the C atoms of the Cp ring and the Zr atom, were revealed from the simulations. 

Energy Minimisation and Related Methods for Exploring the Energy Surface... 

Energy minimisation and normal mode analysis have an important role to play in the study of the solid state. Algorithms similar to those discussed above are employed but an extra feature of such systems, at least when they form a perfect lattice, is that it is can be possible to exploit the space group symmetry of the lattice to speed up the calculations. It is also important to properly take the interactions with atoms in neighbouring cells into account. 

Watson G W, P Tschaufeser, A Wall, R A Jackson and S C Parker 1997. Lattice Energy and Free Energy Minimisation Techniques. Computer Modelling in Inorganic Crystallography. San Diego, Academic Press, pp. 55-81. 

Lonally, the templates were chosen by trial and error or exhaustive enumeration. A itafional method named ZEBEDDE (ZEolites By Evolutionary De novo DEsign) en developed to try to introduce some rationale into the selection of templates et al. 1996 Willock et al. 1997]. The templates are grown within the zeolite by an iterative inside-out approach, starting from a seed molecule. At each jn an action is randomly selected from a list that includes the addition of new (from a library of fragments), random translation or rotation, random bond rota-ing formation or energy minimisation of the template. A cost function based on erlap of van der Waals spheres is used to control the growth of the template ale ... 

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