Water protein surfaces

The adsorption of proteins from solution onto polymeric surfaces depends on protein water, protein surface and surface-water interactions [51,52]. Our optical adsorption study indicates that hydrophobic surfaces preferentially adsorb denatured proteins from a mixed solution. This finding underhnes the amphiphilic nature of proteins and the important role of... 

Hydrophobic bonds, or, more accurately, interactions, form because nonpolar side chains of amino acids and other nonpolar solutes prefer to cluster in a nonpolar environment rather than to intercalate in a polar solvent such as water. The forming of hydrophobic bonds minimizes the interaction of nonpolar residues with water and is therefore highly favorable. Such clustering is entropically driven. The side chains of the amino acids in the interior or core of the protein structure are almost exclusively hydrophobic. Polar amino acids are almost never found in the interior of a protein, but the protein surface may consist of both polar and nonpolar residues. 

Protein crystals contain between 25 and 65 vol% water, which is essential for the crystallisation of these biopolymers. A typical value for the water content of protein crystals is 45% according to Matthews et al. l49,150). For this reason it is possible to study the arrangement of water molecules in the hydration-shell by protein-water and water-water interactions near the protein surface, if one can solve the structure of the crystal by X-ray or neutron diffraction to a sufficiently high resolution151 -153). 

Separations in hydrophobic interaction chromatography have been modeled as a function of the ionic strength of the buffer and of the hydrophobicity of the column, and tested using the elution of lysozyme and ovalbumin from octyl-, butyl- and phenyl-Sepharose phases.2 The theoretical framework used preferential interaction analysis, a theory competitive to solvophobic theory. Solvophobic theory views protein-surface interaction as a two-step process. In this model, the protein appears in a cavity in the water formed above the adsorption site and then adsorbs to the phase, with the free energy change... 

Protein molecules contain both polar and apolar groups. For proteins dissolved in water, these apolar groups tend to be buried in the interior of the globular structure, as a result of expulsion by the surrounding water. However, other interactions, as well as geometrical constraints, interfere with the hydrophobic effect, so that a minor fraction of the water-accessible surface of the protein molecule may be apolar. Protein molecules that do not spontaneously aggregate in water do not have pronounced apolar patches at their surfaces. 

Microbial contamination, especially by salmonellas, is a risk when sprouts are produced commercially for human consumption. For recombinant protein production, seeds can be washed with water and surface-sterilized using hypochlorite solution. Sprouts can also be surface-sterilized during sprouting, by the addition of mild hypochlorite solution directly into the growth medium. Eventually, the hypochlorite is diluted out with pure water or growth medium. In our experiment on plate count agar [28], the sprouts showed no bacterial growth after sterilization with 1% sodium hypochlorite. 

Jensen [3.11] as well as Teeter [3.12] studied by X-ray diffraction the structure of water molecules in the vicinity, at the surface and inside of protein crystals. Jensen used rubredoxin (CEB) crystals to deduce the structure of water from the density distribution of electrons, calculated from diffraction pictures. Jensen found that water molecules which are placed within approx. 60 nm of the protein surface form a net, which is most dense in the distance of a hydrogen bond at the donor- or acceptor- molecules of a protein. In distances larger than 60 nm, the structure of water becomes increasingly blurred, ending in a structureless phase. Water molecules are also in the inside of proteins, but are more strongly bound than... 

The most ordered surface waters are those around charged side chains or in surface crevices. Occasionally those crevices can be very deep, such as the active site pocket in carbonic anhydrase, which extends about 15 A in from the surface, with a network of water molecules (Lindskog f al., 1971). The well-ordered waters at the protein surface are usually part of an approximately tetrahedral (but sometimes planar trigonal) network of hydrogen bonds to the protein and to other waters. An example from rubredoxin is shown in Fig. 60. 

Initial screening conditions are suggested in Table 6.1. Multiple pH values are included because mobile-phase pH can significantly affect retention. Major selectivity shifts such as transpositions in elution order are fairly common changes in resolution are much more so.2,14-16 Changes in retention due to pH variation relate to protein hydration. Proteins are minimally charged at their isoelectric points (pis). This means that they carry the minimum of electrostricted hydration water. Both protein surface hydrophobicity and HIC retention should therefore reach their maximum at a protein s pi.6 As pH is either increased or... 

The introduced cysteine residues are found in one of three possible environments (1) on the water-accessible surface, (2) within the protein interior, or (3) at the protein-lipid interface (Karbn and Akabas, 1998). 

Effect of salt type and concentration The ionic strength of the aqueous solution in eontaet with a reverse micelle phase affects protein partitioning in a number of ways [18,23]. The first is through modification of electrostatic interactions between the protein surface and the surfaetant head groups by modifieation of the eleetrieal double layers adjacent to both the eharged inner mieelle wall and the protein surface. The second effect is to salt out the protein from the mieelle phase because of the inereased propensity of the ionie speeies to migrate to the micelle water pool, reduee the size of the reverse mieelles, and thus displace the protein. 

Bo is the measurement frequency. Rapid exchange between the different fractions is assumed the bulk, water at the protein surface (s) and interior water molecules, buried in the protein and responsible for dispersion (i). In fact, protons from the protein surface exchanging with water lead to dispersion as well and should fall into this category Bulk and s are relevant to extreme narrowing conditions and cannot be separated unless additional data or estimations are available (for instance, an estimation of fg from some knowledge of the protein surface). As far as quadrupolar nuclei are concerned (i.e., and O), dispersion of Rj is relevant of Eqs. (62) and (63) (this evolves according to a Lorentzian function as in Fig. 9) and yield information about the number of water molecules inside the protein and about the protein dynamics (sensed by the buried water molecules). Two important points must be noted about Eqs. (62) and (63). First, the effective correlation time Tc is composed of the protein rotational correlation time and of the residence time iw at the hydration site so that... 

Membranes such as NC supported on glass may be more applicable for protein microarrays than glass substrates. Supported charged nylon membranes for microarrays are currently entering the marketplace as well. The essential ingredient for protein is water. Protein hydration reduces the likelihood for surface denaturation. Hydrophilic membranes allow proteins to... 

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