Shikimic acid pathway lignins

Even the structural material of plants, lignin, comes from the shikimic acid pathway. Lignin—from which wood is made—has a variable structure according to the plant and the position in the plant. A typical splinter is shown here. 

Phenylalanine Ammonia-Lyase. The building units of lignin are formed from carbohydrate via the shikimic acid pathway to give aromatic amino acids. Once the aromatic amino acids are formed, a key enzyme for the control of lignin precursor synthesis is phenylalanine ammonia-lyase (PAL) (1). This enzyme catalyzes the production of cinnamic acid from phenylalanine. It is very active in those tissues of the plant that become lignified and it is also a central enzyme for the production of other phenylpropanoid-derived compounds such as flavonoids and coumarins, which can occur in many parts of the plant and in many different organs (35). Radioactive phenylalanine and cinnamic acid are directly incorporated into lignin in vascular tissue (36). 

Shikimic acid pathway chemical pathway common in plants, bacteria, and fungi, where aromatic amino acids (e.g., tryptophan, phenylalanine, tyrosine) are synthesized, thereby providing the parent compounds for the synthesis of the phenylpropanoid units in lignins. 

L-Phenylalanine,which is derived via the shikimic acid pathway,is an important precursor for aromatic aroma components. This amino acid can be transformed into phe-nylpyruvate by transamination and by subsequent decarboxylation to 2-phenylacetyl-CoA in an analogous reaction as discussed for leucine and valine. 2-Phenylacetyl-CoA is converted into esters of a variety of alcohols or reduced to 2-phenylethanol and transformed into 2-phenyl-ethyl esters. The end products of phenylalanine catabolism are fumaric acid and acetoacetate which are further metabolized by the TCA-cycle. Phenylalanine ammonia lyase converts the amino acid into cinnamic acid, the key intermediate of phenylpropanoid metabolism. By a series of enzymes (cinnamate-4-hydroxylase, p-coumarate 3-hydroxylase, catechol O-methyltransferase and ferulate 5-hydroxylase) cinnamic acid is transformed into p-couma-ric-, caffeic-, ferulic-, 5-hydroxyferulic- and sinapic acids,which act as precursors for flavor components and are important intermediates in the biosynthesis of fla-vonoides, lignins, etc. Reduction of cinnamic acids to aldehydes and alcohols by cinnamoyl-CoA NADPH-oxido-reductase and cinnamoyl-alcohol-dehydrogenase form important flavor compounds such as cinnamic aldehyde, cin-namyl alcohol and esters. Further reduction of cinnamyl alcohols lead to propenyl- and allylphenols such as... 

These monomers can be biosynthesized in plants via the shikimic acid pathway. p-Coumaryl alcohol is a component of grass and forage-type lignin. Coniferyl alcohol is the predominant lignin monomer found in softwoods. 

A wide range of aromatic products in the plant kingdom originate from intermediates of the shikimic acid pathway. These include amino acids and ubiquinone among important primary metabolites and also many other compounds (in contrast fo fungi which possess many acetate-derived products), such as lignins, alkaloids, and phenolic acids. Flavonoids (and stilbenes) also arise in part by this route but additionally utilize acetate in the course of their biosynthesis, which will therefore be described in this chapter. 

The multibranched shikimic acid pathway provides the intermediates for the synthesis of the three amino acids phenylalanine, tyrosine and tryptophan in microorganisms and plants. In plants, these three amino acids are precursors for a variety of secondary metabolites such as alkaloids, coumarins, flavonoids, lignin precursors, indole derivatives and numerous phenolic compounds (Fig. 1). The role of the aromatic amino acids in protein synthesis is well known as is the role of indoleacetic acid in plant development however, the function of the various secondary products is much less clear. Various physiological roles have been proposed including pest resistance, chromagens in flowers and fruits, and precursors for the structural component, lignin. 

Whereas two-thirds of wood consists of polysaccharides, one-third of wood consists of lignin, a phenylpropane polymer formed via the shikimic acid pathway. Therefore, it is perhaps not surprising that wood extractives are extraordinarily rich in a wide array of benzenoid natural products, many of which are derived from the same phenylpropane monomers. 

The building blocks of wood lignin are derived from carbohydrates metabolized via a so-called shikimic acid pathway and converted to phenylpropane amino acids (Figure 6.6). These amino acids supply precursors for the s Tithesis of lignin, plant proteins and flavonoids. The first step is the -elimination of ammonia from L-phenylalanine to form fra 5-cinnamic acid. Successive hydroxylation and methylation reactions convert cinnamic acid to />-coumaryl alcohol, caffeyl alcohol, coniferyl alcohol, 5-hydroxyconiferyl alcohol and sinapyl alcohol. Softwood mainly uses coniferyl alcohol with a small amount of p-cou-maryl alcohol. 

This route, often called the shikimic acid pathway involves the condensation of phosphoenolpyruvate (2) and a 4-carbon sugar erythrose-4-phosphate (1) which is derived from the pentose phosphate pathway. The product of this reaction is converted to shikimic acid (3). Phosphorylation of shikimic acid to yield 5-phosphoshikimic acid (4) is followed by the addition of another molecule of phospho-enol pyruvate (2) which results in the synthesis of prephenic acid (5). Aromatization of the prephenic acid can give rise to phenylpyruvic acid (6) which upon transamination becomes phenylalanine. The carbon skeletons of the other aromatic amino acids, tryptophane and tyrosine are also synthesised via the shikimic acid pathway as is lignin and many of the aromatic secondary products described in Chapter 6. 

Plant metabolism can be separated into primary pathways that are found in all cells and deal with manipulating a uniform group of basic compounds, and secondary pathways that occur in specialized cells and produce a wide variety of unique compounds. The primary pathways deal with the metabolism of carbohydrates, lipids, proteins, and nucleic acids and act through the many-step reactions of glycolysis, the tricarboxylic acid cycle, the pentose phosphate shunt, and lipid, protein, and nucleic acid biosynthesis. In contrast, the secondary metabolites (e.g., terpenes, alkaloids, phenylpropanoids, lignin, flavonoids, coumarins, and related compounds) are produced by the shikimic, malonic, and mevalonic acid pathways, and the methylerythritol phosphate pathway (Fig. 3.1). This chapter concentrates on the synthesis and metabolism of phenolic compounds and on how the activities of these pathways and the compounds produced affect product quality. 

Phenylpropanoids have an aromatic ring with a three-carbon substituent. Caffeic acid (308) and eugenol (309) are known examples of this class of compounds. Phenylpropanoids are formed via the shikimic acid biosynthetic pathway via phenylalanine or tyrosine with cinnamic acid as an important intermediate. Phenylpropanoids are a diverse group of secondary plant compounds and include the flavonoids (plant-derived dyes), lignin, coumarins, and many small phenolic molecules. They are known to act as feeding deterrents, contributing bitter or astringent properties to plants such as lemons and tea. 

It has been noted that the chemical diversity of plant phenolics is as vast as the plant diversity itself. Most plant phenolics are derived directly from the shikimic acid (simple benzoic acids), shikimate (phenylpropanoid) pathway, or a combination of shikimate and acetate (phenylpropanoid-acetate) pathways. Products of each of these pathways undergo additional structural elaborations that result in a vast array of plant phenolics such as simple benzoic acid and ciimamic acid derivatives, monolig-nols, lignans and lignin, phenylpropenes, coumarins, stilbenes, flavonoids, anthocyanidins, and isollavonoids. 

Lignin precursors p-coumaryl (p-CA), coniferyl (CA) and sinapyl (SA) alcohols, are synthesized through the shikimate and cinamic acid pathways, starting from phenylalanine which under the action of phenylalanine ammonia-lyase (PAL) is deaminated followed by hydroxylations of the aromatic ring, methyla-tions and reductions of therminal acidic group to an alcohol leading to the formation of the monolignols (Fig. 8.2), [37, 48]. 

Secondary metabolites, produced by pathways derived from primary metabolic routes, are numerous and widespread, especially in higher plants. More than 20,000 were known in 1985 (Hartmann, 1985), and at least 1000 additional compounds, are described each year. In practice, the difference between the primary and secondary metabolites is fuzzy. Plant hormones such as gibberellic acid, indoleace-tic acid (auxin), ethylene, kinetin, and abscisic acid, as well as compounds involved in plant cell wall structure such as cinnamic acid and its polymeric derivative, lignin, are intermediate between primary and secondary metabolism (Birch, 1973). In some instances, compounds normally considered primary metabolites may accumulate in large amounts and behave in a manner usually associated with secondary metabolites. Entities such as shikimic acid and squalene, which initially were considered secondary metabolites, were subsequently shown to be important intermediates in the formation of primary metabolites (phenylalanine, tyrosine and tryptophan, and steroids, respectively). 

The general phenylpropanoid pathway links the shikimate pathway to the lignin branch pathway. The latter pathway leads to the formation of a series of hydroxycinnamic acids and hydroxycinnamoyl-CoA esters varying in their degrees of hydroxylation and methylation [5]. 

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