Redox potentials, calculations

Li, G.H. Zhang, X.D. Cui, Q., Free energy perturbation calculations with combined QM/MM. Potential complications, simplifications, and applications to redox potential calculations, J. Phys. Chem. B 2003,107, 8643-8653. 

From free energy and redox potential calculations, be able to predict in which direction chemical reactions will proceed. 

Electrostatic and polarization interactions occurring within the protein matrix and the solvent environment were investigated in a second study for each of the 10 simple BS states and the additional two states arising from spin isomerization within the BS6 state. " " Moreover, redox-potential calculations were also performed. When the protein and solvent environment were taken into account, BS6-3 was found to be lowest in energy, followed by BS2 (+0.39 kcal mol" ), BS6-1 (+1.70 kcal molX and BS6-2 (+2.34 kcal mol ). For the most favorable BS state, the electrostatic influence of the protein field... 

Table 2. List of redox potentials calculated for partial reactions considered in this system. Activity of each chemical species is substituted by the actual molar concentration in the present reaction system, and specifically, activities of H2 and NH3 are both substituted by 10 6 to obtain reference values.

Calculations of redox potentials may have two somewhat different purposes (1) to calculate the redox potential of a given protein or (2) to calculate the differences in redox... 

J Li, MR Nelson, CY Peng, D Bashford, L Noodleman. Incorporating protein environments in density functional theory A self-consistent reaction field calculation of redox potentials of [2Ee2S] clusters in feiTedoxm and phthalate dioxygenase reductase. J Phys Chem A 102 6311-6324, 1998. 

J-M Mouesca, JL Chen, F Noodleman, D Bashford, DA Case. Density functional/Poisson-Boltzmann calculations of redox potentials for iron-sulfur clusters. J Am Chem Soc 116 11898-11914, 1994. 

As a result, the electromotive force (EMF) of the cell is zero In the presence of fluoride ions, cerium(IV) forms a complex with fluoride ions that lowers the cerium(IV)-cerium(IIl) redox potential The inner half-cell is smaller, and so only 5 mL of cerium(IV)-cenum (III) solution is added To the external half-cell, 50 mL of the solution is added, but the EMF of the cell is still zero When 10 mL of the unknown fluonde solution is added to the inner half-cell, 100 mL of distilled water IS added to the external half-cell The solution in the external half-cell is mixed thoroughly by turning on the stirrer, and 0 5 M sodium fluonde solution is added from the microburet until the null point is reached The quantity of known fluonde m the titrant will be 10 times the quantity of the unknown fluoride sample, and so the microburet readings must be corrected prior to actual calculations... 

In the case of CaCl2 and NaCl, the order corresponds with the corrosion behaviour expected from cathodic polarisation curves . The order of aggressiveness of chlorides can also be explained on the basis of redox potentials of the melts, calculated on thermodynamic grounds from the free energies of formation of the appropriate oxides and chlorides . The order of aggressiveness of nitrates is complicated by passivity effects , while that of alkalis in contact with air is... 

Variamine blue (C.I. 37255). The end point in an EDTA titration may sometimes be detected by changes in redox potential, and hence by the use of appropriate redox indicators. An excellent example is variamine blue (4-methoxy-4 -aminodiphenylamine), which may be employed in the complexometric titration of iron(III). When a mixture of iron(II) and (III) is titrated with EDTA the latter disappears first. As soon as an amount of the complexing agent equivalent to the concentration of iron(III) has been added, pFe(III) increases abruptly and consequently there is a sudden decrease in the redox potential (compare Section 2.33) the end point can therefore be detected either potentiometrically or with a redox indicator (10.91). The stability constant of the iron(III) complex FeY- (EDTA = Na2H2Y) is about 1025 and that of the iron(II) complex FeY2 - is 1014 approximate calculations show that the change of redox potential is about 600 millivolts at pH = 2 and that this will be almost independent of the concentration of iron(II) present. The jump in redox potential will also be obtained if no iron(II) salt is actually added, since the extremely minute amount of iron(II) necessary is always present in any pure iron(III) salt. 

The standard redox potential is 1.14 volts the formal potential is 1.06 volts in 1M hydrochloric acid solution. The colour change, however, occurs at about 1.12 volts, because the colour of the reduced form (deep red) is so much more intense than that of the oxidised form (pale blue). The indicator is of great value in the titration of iron(II) salts and other substances with cerium(IV) sulphate solutions. It is prepared by dissolving 1,10-phenanthroline hydrate (relative molecular mass= 198.1) in the calculated quantity of 0.02M acid-free iron(II) sulphate, and is therefore l,10-phenanthroline-iron(II) complex sulphate (known as ferroin). One drop is usually sufficient in a titration this is equivalent to less than 0.01 mL of 0.05 M oxidising agent, and hence the indicator blank is negligible at this or higher concentrations. 

In principle it should be possible to predict quantitatively the reactivity of such species containing nucleophilic homolytic leaving groups towards diazonium ions, by using a dual parameter equation. One parameter serves as a measure of the donor property of the particle the other parameter is the redox potential. However, the complex nature of kinetics of homolytic dediazoniations is likely to be a great obstacle in attempts to calculate rate constants referring only to the radical-generation step. 

In Figure 2 the solubility and speciation of plutonium have been calculated, using stability data for the hydroxy and carbonate complexes in Table III and standard potentials from Table IV, for the waters indicted in Figure 2. Here, the various carbonate concentrations would correspond to an open system in equilibrium with air (b) and closed systems with a total carbonate concentration of 30 mg/liter (c,e) and 485 mg/liter (d,f), respectively. The two redox potentials would roughly correspond to water in equilibrium wit air (a-d cf 50) and systems buffered by an Fe(III)(s)/Fe(II)(s)-equilibrium (e,f), respectively. Thus, the natural span of carbonate concentrations and redox conditions is illustrated. 

The conspicuous separation between the cathodic and anodic peak potentials was initially interpreted in terms of the simple theory for redox polymers as a kinetic effect of slow heterogeneous charge transfer the thermodynamic redox potential of the whole systems was calculated from the mean value between Ep and Ep ... 

As a simplification, it was assumed that the interactions between charged oligomeric segments were negligible. These redox data correlate well with potential values obtained by extrapolation from quantum ma hanical calculations and redox potential measurements on oligomers of defined chain length. As expected,... 

The Rieske protein II (SoxF) from Sulfolobus acidocaldarius, which is part, not of a bci or b f complex, but of the SoxM oxidase complex 18), could be expressed in E. coli, both in a full-length form containing the membrane anchor and in truncated water-soluble forms 111). In contrast to the results reported for the Rieske protein from Rhodobacter sphaeroides, the Rieske cluster was more efficiently inserted into the truncated soluble forms of the protein. Incorporation of the cluster was increased threefold when the E. coli cells were subject to a heat shock (42°C for 30 min) before induction of the expression of the Rieske protein, indicating that chaperonins facilitate the correct folding of the soluble form of SoxF. The iron content of the purified soluble SoxF variant was calculated as 1.5 mol Fe/mol protein the cluster showed g values very close to those observed in the SoxM complex and a redox potential of E° = +375 mV 111). 

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