Reaction Ribose

The pentose phosphates formed in the transketolase reactions—ribose 5-phosphate and xylulose 5-phos-phate—are converted to ribulose 5-phosphate (steps (7) and (3)), which in the final step ( ) of the cycle is phosphorylated to ribulose 1,5-bisphosphate by ribulose 5-phosphate kinase (Fig. 20-13). This is the third very exergonic reaction of the pathway, as the phosphate anhydride bond in ATP is swapped for a phosphate ester in ribulose 1,5-bisphosphate. 

Following an 80 min reaction, ribose/phosphate buffer mixtures were rapidly cooled to 25 C, treated with o-phenylenediamine and incubated at 50 C for 30 min. Quinoxalines and unreacted OPD were extracted and concentrated for GC/MS analysis or separation by preparative TLC. Volatile quinoxaline and methylquinoxalines were identified by Rt and MS of available standards. 2-Ethylquinoxaline was tentatively identified by its MS alone. Non-volatile quinoxalines were isolated by preparative TLC and tentatively identified through literature Rf, NMR and UV data. Addition of OPD at die start of ribose/phosphate buffer reactions produced somewhat higher yields of the same quinoxalines in a similar ratio. No evidence for quinoxaline products was found in control experiments run in bis-tris buffer. 

The pentose phosphates formed in the transketolase reactions—ribose 5-phosphate and xylulose 5-phosphate—are converted to ribulose 5-phosphate (steps... 

As indicated in the Introduction, the condensation of formaldehyde into monosaccharides by basic catalysis has been known since the last century. The synthesis starts with the formation of glycolaldehyde which is a slow reaction and is responsible for the induction period observed in the condensation of formaldehyde to sugars. Once sufficient amounts of glycolaldehyde have been formed, an autocatalytic process ensues which transforms glycolaldehyde into glyceraldehyde and dihydroxyacetone, and then into all the possible tetroses, pentoses and hexoses. The principal mechanism is a base catalyzed aldol condensation, somewhat similar to the enzyme catalyzed biochemical transformations of sugars. A common mineral, kaolinite, has been found to be an efficient catalyst for this reaction. Ribose is indeed one of the important monosaccharides formed in this reaction. 

Because six membered rings are normally less strained than five membered ones pyranose forms are usually present m greater amounts than furanose forms at equilib rium and the concentration of the open chain form is quite small The distribution of carbohydrates among their various hemiacetal forms has been examined by using H and NMR spectroscopy In aqueous solution for example d ribose is found to contain the various a and p furanose and pyranose forms m the amounts shown m Figure 25 5 The concentration of the open chain form at equilibrium is too small to measure directly Nevertheless it occupies a central position m that mterconversions of a and p anomers and furanose and pyranose forms take place by way of the open chain form as an inter mediate As will be seen later certain chemical reactions also proceed by way of the open chain form... 

The TK-catalyzed reaction requires the presence of thiamine pyrophosphate and Mg " as cofactors. Although the substrate specificity of the enzyme has not been thoroughly investigated, it has been shown that the enzyme accepts a wide variety of 2-hydroxyaldehydes including D-glyceraldehyde 3-phosphate [591-57-1], D-glyceraldehyde [453-17-8], D-ribose 5-phosphate /47(9(9-2%/7, D-erythrose 4-phosphate and D-erythrose [583-50-6] (139,149—151). 

FIGURE 1.9 (a) Amino acids build proteins by connecting the n-carboxyl C atom of one amino acid to the n-amino N atom of the next amino acid in line, (b) Polysaccharides are built by combining the C-1 of one sugar to the C-4 O of the next sugar in the polymer, (c) Nucleic acids are polymers of nucleotides linked by bonds between the 3 -OH of the ribose ring of one nucleotide to the 5 -P04 of its neighboring nucleotide. All three of these polymerization processes involve bond formations accompanied by the elimination of water (dehydration synthesis reactions). 

This enzyme interconverts ribulose-5-P and ribose-5-P via an enediol intermediate (Figure 23.30). The reaction (and mechanism) is quite similar to the phosphoglucoisomerase reaction of glycolysis, which interconverts glucose-6-P and fructose-6-P. The ribose-5-P produced in this reaction is utilized in the biosynthesis of coenzymes (including N/ DH, N/ DPH, F/ D, and Big), nucleotides, and nucleic acids (DNA and RNA). The net reaction for the first four steps of the pentose phosphate pathway is... 

Even when the latter choice has been made, however, the cell must still be cognizant of the relative needs for ribose-5-phosphate and N/VDPH (as well as ATP). Depending on these relative needs, the reactions of glycolysis and the pentose phosphate pathway can be combined in novel ways to emphasize the synthesis of needed metabolites. There are four principal possibilities. 

BOTH RIBOSE-5-P AND NADPH ARE NEEDED BY THE CELL In this case, the first four reactions of the pentose phosphate pathway predominate (Figure 23.37). N/VDPH is produced by the oxidative reactions of the pathway, and ribose-5-P is the principal product of carbon metabolism. As stated earlier, the net reaction for these processes is... 

FIGURE 23.37 Wlien biosynthetic demands dictate, the first four reactions of the pentose phosphate pathway predominate and the principal products are ribose-5-P and NADPH. 

Angier and Marsico followed the course of alkylation first. The 7-dimethylamino-5-methylmercapto derivative reacted with dimethyl sulfate in an alkaline medium to yield a mixture of the 2- and 3-methyl derivatives. The reaction of the 7-diraethylamino derivative with ethyl iodide in an alkaline medium led to a mixture of all three possible monoethyl derivatives. The position of the alkyl group in all these substances was defined by comparing the UV spectra with derivatives prepared by a straightforward synthesis. After reacting the mercuric salts with tri-0-benzoylribofuranosyl chloride, they demonstrated the ribose residue to be bound in position 2. The same structure was shown to be valid for the derivative prepared by Andrews and Barber. ... 

A more complicated reaction sequence has been used by Ukita and Nagasawa (59) in their synthesis of 2-deoxy D-ribose 5-phosphate (2-deoxy D-erythro-pentose 5-(dihydrogen phosphate)), (29). They phosphorylated a mixture of the anomeric methyl deoxyribofuranosides (24)... 

Generally speaking, the phosphorylated deoxysugars undergo the usual reactions of carbohydrates without complication. For instance, both 2-deoxy D-ribose 5-phosphate (52, 59) and 2-deoxy D-xylose 5-phosphate (2) can be reduced to the corresponding 2-deoxy d-erythro- (48) and 2-deoxy D-threo-pentitol 5-phosphates (49). 2-deoxy ribose 5-phosphate has also been oxidized (52) to the corresponding phosphorylated acid (50). 

In theory, periodate oxidation could have given a clear-cut answer as to the composition of the isomeric mixture of deoxy ribose phosphates. The 4-phosphate (73), devoid of vicinal diol groups, should be resistant to periodate the 3-phosphate (74) should reduce one and only one molar equivalent of the oxidant and yield one molar equivalent of both formaldehyde and the phosphorylated dialdehyde (75), whereas the 5-phosphate (76) could be expected to reduce one molar equivalent of periodate relatively rapidly, followed by a slower overoxidation reaction owing to the oxidation of malonaldehyde, formed as a result of the glycol cleavage. 

In fact, it has been found (52) that in unbuffered solution, at room temperature, authentic 2-deoxy ribose 5-phosphate reduces more than 4 molar equivalents of periodate, but. that there is no noticeable slowing down of the reaction rate after the reduction of the first molar equivalent. This may be owing to the fact that only the aldehydo form (76) of 2-deoxy ribose 5-phosphate has a free vicinal diol group as the acyclic 2-deoxy ribitol 5-phosphate reduces one molar equivalent of periodate quite fast (58), it is probable that the time-curve of periodate uptake by the phosphorylated sugar reflects the rate of formation of the aldehyde form from the furanose form. 

In as far as other analytical methods are concerned, many specific reactions have been elaborated for the quantitative determination of 2-deoxy aldoses. 2-Deoxy-D-ribose (2-deoxy-D-erythro-pentose), a compound which was recognized early as playing an important role in biological systems, has been of particular interest. Overend and Stacey (43) have given a critical review of the methods available until 1952 for the estimation of 2-deoxy pentoses. A recent summary of specific methods for the identification and quantitative estimation of the different classes of deoxy sugars has been prepared by Dische (13). 

Problem 25.21 1 What product(s) would you expect from Kiliani-Fischer reaction of n-ribose ... 

One of the steps in the pentose phosphate pathway for glucose catabolism is the reaction of xylulose 5-phosphate with ribose 5-phosphate in the presence of a transketolase to give glyceraldehyde 5-phosphate and sedoheptulose 7-phosphate. 

The path to the complex heptacycle 87 (Scheme 17 a) commences with a stereoselective Wittig reaction between 2-deoxy-D-ribose (110) and (ethoxycarbonylethylidene)triphenylphosphorane (see Scheme 21). This reaction takes advantage of a ring-chain tauto-... 

Researchers found that NAD serves as a substrate in poly(ADP-ribose) synthesis, a reaction important for DNA repair processes. In addition, it takes part in mono (ADP-ribosyl)ation reactions that are involved in endogenous regulation of many aspects of signal transduction and membrane trafficking in eukaryotic cells. 

Triazoline imino sugar derivatives 297 that are prospective glycosidase inhibitors have been prepared as single diastereomers in high yield via an lAOC reaction of in situ generated azido alkene 296 (Eq. 32) [78]. m-CPBA oxidation of the dithioacetal groups in the 0-acetylated 5-azido-5-deoxydibenzyl dithio-acetal of o-xylose or D-ribose 294 to the bis-sulfone 295, followed by loss of HOAc between C-1 and C-2 provided the lAOC precursor 296. 

After silylation-amination in situ transsilylation (cf Section 2.3) of the intermediate persilylated cytidines 5 with excess boiling methanol for 3-5 h gives the desired free cytidines 6 and methoxytrimethylsilane 13a (b.p. 57°C) [13]. Thus protection of the alcohohc hydroxyl groups of the ribose moiety and silylation-activation of the 4-position in the pyrimidine moiety in persilylated uridine 3, and the concomitant amination of 3, aU in one reaction step, to 5 is followed finally by in situ transsilylation (cf. Section 2.3) with excess boihng methanol in one reaction vessel. 

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