Big Chemical Encyclopedia

Chemical substances, components, reactions, process design ...

Articles Figures Tables About

Proteins secondary

Chi Z H, Chen X G, Holtz J S W and Asher S A 1998 UV resonance Raman-selective amide vibrational enhancement quantitative methodology for determining protein secondary structure Biochemistry 27 2854-64... [Pg.1175]

King, R D, M Saqi, R Sayle and M J E Sternberg 1997. DSC Public Domain Protein Secondary Structui e Prediction. Computer Applications in the Biosciences 13 473-474. [Pg.576]

Rost B and C Sander 1993. Prediction of Protein Secondary Structure at Better than 70% Accurt journal of Molecular Biology 232 584-599. [Pg.577]

V Hel IX (Section 27 19) One type of protein secondary struc ture It IS a right handed helix characterized by hydrogen bonds between NH and C=0 groups It contains approxi mately 3 6 amino acids per turn... [Pg.1285]

Secondary structure (Section 27 19) The conformation with respect to nearest neighbor ammo acids m a peptide or pro tern The a helix and the pleated 3 sheet are examples of protein secondary structures... [Pg.1293]

Fig. 2. Protein secondary stmcture (a) the right-handed a-helix, stabilized by intrasegmental hydrogen-bonding between the backbone CO of residue i and the NH of residue t + 4 along the polypeptide chain. Each turn of the helix requires 3.6 residues. Translation along the hehcal axis is 0.15 nm per residue, or 0.54 nm per turn and (b) the -pleated sheet where the polypeptide is in an extended conformation and backbone hydrogen-bonding occurs between residues on adjacent strands. Here, the backbone CO and NH atoms are in the plane of the page and the amino acid side chains extend from C ... Fig. 2. Protein secondary stmcture (a) the right-handed a-helix, stabilized by intrasegmental hydrogen-bonding between the backbone CO of residue i and the NH of residue t + 4 along the polypeptide chain. Each turn of the helix requires 3.6 residues. Translation along the hehcal axis is 0.15 nm per residue, or 0.54 nm per turn and (b) the -pleated sheet where the polypeptide is in an extended conformation and backbone hydrogen-bonding occurs between residues on adjacent strands. Here, the backbone CO and NH atoms are in the plane of the page and the amino acid side chains extend from C ...
JE Gibrat, J Garnier, B Robson. Eurther developments of protein secondary structure prediction using information theory. New parameters and consideration of residue pairs. J Mol Biol 198 425-443, 1987. [Pg.347]

LH Holley, M Karplus. Protein secondary structure prediction with a neural network. Proc Natl Acad Sci USA 86 152-156, 1989. [Pg.348]

B Rost, C Sander. Combining evolutionary information and neural networks to predict protein secondary stiaicture. Proteins Stiaict Fund Genet 19 55-72, 1994. [Pg.348]

AL Delcher, S Kasif, HR Goldberg, WH Hsu. Protein secondary structure modelling with probabilistic networks. Intelligent Systems m Molecular Biology 1 109-117, 1993. [Pg.348]

JM Chandoma, M Karplus. The importance of larger data sets for protein secondary structure prediction with neural networks. Protein Sci 5 768-774, 1996. [Pg.348]

GE Arnold, AK Dunker, SJ Johns, RJ Douthart. Use of conditional probabilities for determining relationships between ammo acid sequence and protein secondary structure. Proteins 12 382-399, 1992. [Pg.348]

P Stolorz, A Lapedes, Y Xia. Predicting protein secondary structure using neural net and statistical methods. J Mol Biol 225 363-377, 1992. [Pg.348]

MJ Thompson, RA Goldstein. Pi edictmg protein secondary stiaicture with probabilistic schemata of evolutionarily derived information. Protein Sci 6 1963-1975, 1997. [Pg.348]

Barton, G.J. Protein secondary structure prediction. Curr. Opin. Struct. Biol. 5 372-376, 1995. [Pg.371]

Rost, B., Sander, C., Schneider, R. Redefining the goals of protein secondary structure prediction. /. Mol. Biol. [Pg.372]

Chapter 6 Proteins Secondary, Tertiary, and Quaternary Structure... [Pg.160]

The conformational changes which have been described so far are probably all relatively small local changes in the structure of H,K-ATPase. This has been confirmed by Mitchell et al. [101] who demonstrated by Fourier transform infrared spectroscopy that a gross change in the protein secondary structure does not occur upon a conformational change from Ei to 3. Circular dichroism measurements, however [102,103], indicated an increase in a-helical structure upon addition of ATP to H,K-ATPase in the presence of Mg and... [Pg.36]

M. Vieth, A. Kolinsky, J. Skolnicek, and A. Sikorski, Prediction of protein secondary structure by neural networks, encoding short and long range patterns of amino acid packing. Acta Biochim. Pol., 39 (1992) 369-392. [Pg.697]

Determination of protein secondary structure has long been a major application of optical spectroscopic studies of biopolymers (Fasman, 1996 Havel, 1996 Mantsch and Chapman, 1996). These efforts have primarily sought to determine the average fractional amount of overall secondary structure, typically represented as helix and sheet contributions, which comprise the extended, coherent structural elements in well-structured proteins. In some cases further interpretations in terms of turns and specific helix and sheet segment types have developed. Only more limited applications of optical spectra to determination of tertiary structure have appeared, and these normally have used fluorescence or near-UV electronic circular dichroism (ECD) of aromatic residues to sense a change in the fold (Haas, 1995 Woody and Dunker, 1996). [Pg.135]

Our band shape methods have made use of the principal component method of factor analysis (Pancoska etal., 1979 Malinowski, 1991) to characterize the protein spectra in terms of a relatively small number of coefficients (loadings) (Pancoska et al., 1994 1995 Baumruk et al., 1996). This approach is similar, in its initial stages, to various methods (Selcon, Variselect, etc.) that have been used for determining protein secondary structure from ECD data (Hennessey and Johnson, 1981 Provencher and Glockner, 1981 Johnson, 1988 Pancoska and Keiderling, 1991 Sreerama and Woody, 1993, 1994 Venyaminov and Yang, 1996). At this point, one can say these traditional quantitative methods have had little impact upon structural studies of denatured proteins. [Pg.167]

Kabsch, W., and C. Sander. 1983. Dictionary of Protein Secondary Structure Pattern Recognition of Hydrogen-Bonded and Geometrical Features. Biopol. 22,2577-2637. [Pg.155]


See other pages where Proteins secondary is mentioned: [Pg.2977]    [Pg.2991]    [Pg.1291]    [Pg.158]    [Pg.627]    [Pg.33]    [Pg.33]    [Pg.128]    [Pg.141]    [Pg.171]   
See also in sourсe #XX -- [ Pg.117 ]

See also in sourсe #XX -- [ Pg.178 ]




SEARCH



3-10 Stretch, Protein Secondary Structures

Alpha-Helix, Protein Secondary Structures

Amino acid peroxides, protein secondary

Amino acid peroxides, protein secondary reactions

Beta-Strand, Protein Secondary Structures

Binding protein dependent secondary

Binding protein dependent secondary transporters

Dictionary of Protein Secondary Structure

Fourier transform infrared spectroscopy protein secondary structures

Genetic protein secondary structures

Globular proteins secondary structures

Hydrogen bonding protein secondary structure

Hydrogen bonds protein secondary structure

Infrared spectroscopy protein secondary structure

Infrared spectroscopy protein secondary structure determination

Molecular shape of proteins primary, secondary and tertiary structures

Non-Native Radicals and Secondary Radical Transfer Pathways Observed in Mutant R2 Proteins

Notes to Secondary Structures of Globular Proteins

Pleated sheet, secondary structure of protein

Prediction of Protein Secondary Structures from Sequences

Prediction of Secondary Structure in Proteins

Prediction of secondary and tertiary protein structure

Primary, Secondary, Tertiary, and Quaternary Structure of Proteins

Protein , folding patterns secondary structure

Protein Secondary Structure Prediction Suite

Protein folding mechanisms secondary structure formation

Protein oxidation secondary radical reactions

Protein secondary amide bands

Protein secondary barrels

Protein secondary stmcture

Protein secondary structure

Protein secondary structure prediction

Protein secondary structure, methods

Protein secondary structure, methods study

Protein secondary structures entries

Protein secondary structures predicting

Protein secondary structures representation

Protein secondary structures structure prediction from

Protein sequence secondary

Protein sequence secondary databases

Protein super-secondary structure

Protein! s) secondary

Protein-energy malnutrition secondary

Proteins Secondary, Tertiary, and Quaternary Structures

Proteins alternative secondary

Proteins primary, secondary and tertiary structure

Proteins repetitive secondary

Proteins secondary and tertiary structure

Proteins secondary structure and

Proteins secondary structure, accuracy

Proteins secondary transformations

Proteins, backbones, secondary structures

Proteins, self-assembly secondary protein structure

Schematic pictures of proteins highlight secondary structure

Secondary Structure of Proteins and Beyond

Secondary Structures of Peptides and Proteins

Secondary Structures, Protein Identification

Secondary active transporters binding protein dependent

Secondary and tertiary restraints in assembly of protein structures

Secondary metabolites interactions with proteins

Secondary protein structure 3-pleated sheet

Secondary protein structure coil conformation

Secondary protein structure loop conformation

Secondary protein structure methodology

Secondary protein structure optimization

Secondary protein structure physical model

Secondary protein structure size-dependent potential

Secondary protein structure supersecondary

Secondary protein structure techniques

Secondary protein structure tertiary folding simulation

Secondary protein structures alternative conformations

Secondary structure of a protein

Secondary structure of proteins

Secondary structure protein database selection

Secondary structure, in proteins

Secondary structures of membrane proteins

Secondary structures, protein-based

Secondary structures, protein-based materials

Secondary, Tertiary, and Quaternary Structure of Proteins

Spiral staircase, secondary structure protein

The secondary structure of a protein

The secondary structure of proteins

Turn, Protein Secondary Structures

Turn, Protein Secondary Structures Identification

© 2024 chempedia.info