Protein initial steps

PH-20, a guinea pig sperm protein of 64 kD, is present on both the plasma membrane and inner acrosomal membrane of sperm. It is essential for adhesion of sperm to the zona peUucida, the initial step in the fertilization process. Active immunization with PH-20 causes infertility in both male and female guinea pigs for a period ranging from 6 to 15 months (120). 

Amide hydrolysis is common in biological chemistry. Just as the hydrolysis of esters is the initial step in the digestion of dietary fats, the hydrolysis of amides is the initial step in the digestion of dietary proteins. The reaction is catalyzed by protease enzymes and occurs by a mechanism almost identical to that we just saw for fat hydrolysis. That is, an initial nucleophilic acyl substitution of an alcohol group in the enzyme on an amide linkage in the protein gives an acyl enzyme intermediate that then undergoes hydrolysis. 

FIG. 2. The formation of the apical protein complex involves two distinct steps. Bazooka is localized apically in the epithelium from which neuroblasts are derived. In the interphase (G2), delaminating neuroblast formation of the apical complex is initiated. It is thought that Baz acts to allow neuroblasts to retain the apical/basal polarity inherent in the epithelium. Baz recruits Insc to the neuroblast apical stalk during delamination before Pins becomes part of the complex. During this initiation step Baz, Insc and Pins are part of a linear hierarchy. However following delamination and during mitosis, the maintenance of the apical localization of each of these proteins requires all three proteins. 

Recently, Batthyany et al. [133] pointed out that the reduction of cupric ions bound to apolipoprotein B-100 by endogenous LDL components might be an initiation step in copper-mediated LDL oxidation. They suggested that this reaction proceeds to form cuprous ion and the protein-tryptophanyl free radical the latter was identified on the basis of EPR spectrum with spin-trap 2-methyl-2-nitrosopropane. 

Although the final steps of the blood clotting cascade are identical, the initial steps can occur via two distinct pathways extrinsic and intrinsic. Both pathways are initiated when specific clotting proteins make contact with specific surface molecules exposed only upon damage to a blood vessel. Clotting occurs much more rapidly when initiated via the extrinsic pathway. 

The initial steps of the intrinsic pathway are somewhat more complicated. This system requires the presence of clotting factors VIII, IX, XI and XII, all of which, except for factor VIII, are endo-acting proteases. As in the case of the extrinsic pathway, the intrinsic pathway is triggered upon exposure of the clotting factors to proteins present on the surface of body tissue exposed by vascular injury. These protein binding/activation sites probably include collagen. 

The amino acid L-tryptophan is the precursor for the synthesis of 5-HT. The synthesis and primary metabolic pathways of 5-HT are shown in Figure 13-5. The initial step in the synthesis of serotonin is the facilitated transport of the amino acid L-tryptophan from blood into brain. The primary source of tryptophan is dietary protein. Other neutral amino acids, such as phenylalanine, leucine and methionine, are transported by the same carrier into the brain. Therefore, the entry of tryptophan into brain is not only related to its concentration in blood but is also a function of its concentration in relation to the concentrations of other neutral amino acids. Consequently, lowering the dietary intake of tryptophan while raising the intake of the amino acids with which it competes for transport into brain lowers the content of 5-HT in brain and changes certain behaviors associated with 5-HT function. This strategy for lowering the brain content of 5-HT has been used clinically to evaluate the importance of brain 5-HT in the mechanism of action of psychotherapeutic drugs. 

The initial step after cellular uptake of T4 is metabolic transformation to 3,5,3, -tri-iodothyronine (T3) (Fig. 52-8), which interacts with cytosolic and nuclear receptors, as well as with synaptosomal membrane binding sites of unknown function [25], Cytosolic receptors are proteins of 70 kDa that do not appear to undergo translocation to cell nuclei, nor do they appear to be nuclear proteins that have leaked out of cell nuclei during cell rupture nuclear receptors are proteins of 50 70 kDa that have both DNA-and hormone-binding domains [25,26,28],... 

An example that alterations in the ubiquitin-proteasome system may be a primary event in AD, after ABP-induced toxicity or accumulation, was provided by Konishi et al. (273), who found that frameshift ubiquitin-B was present in subjects with AD pathology prior to development of dementia, probably accumulating in the initial steps of AD pathogenesis, whereas complement proteins were detected in AD patients but not in subjects with AD pathology and no symptoms of dementia, indicating the involvement of complement proteins in the later stage of dementia (273). 

Figure 20.25 Regulation of the activities of the aminoacyl-tRNA synthetases by the concentrations of free tRNAs (i.e. uncharged tRNA). Changes in the concentrations of free tRNAs provide the mechanism for communication between control via the initiation factor (Figure 20.20) and ribosomal protein kinase (steps 6 and 7) and the flux-generating step.

The first phase of translation, initiation, involves several steps. First, two proteins, initiation factors IF-1 and IF-3, bind to the 30 S subunit (1). Another factor, IF-2, binds as a complex with GTP (2). This allows the subunit to associate with the mRNA and makes it possible for a special tRNA to bind to the start codon (3). In prokaryotes, this starter tRNA carries the substituted amino acid N-formylmethionine (fMet). In eukaryotes, it carries an unsubstituted methionine. Finally, the 50 S subunit binds to the above complex (4). During steps 3 and 4, the initiation factors are released again, and the GTP bound to IF-2 is hydrolyzed to GDP and Pj. 

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