Peptides chromatographic separation

MALDI-ToF is a technique that allows the molecular weights of proteins and peptides to be determined. It is less susceptible to suppression effects than electrospray ionization and thus is able to be used for the direct analysis of mixtures. In the case of a crude tryptic digest, MALDI-ToF will provide a molecular weight profile of the polypeptides present without the analysis time being extended by the need to use some form of chromatographic separation. 

Figure 16. Chromatographic separation of peptides of a tryptic hydrolysate of the a chain of Hb-St. Claude ona O.9 X O cm column of Chromo-bead resin type P at 37°C. The pH gradient is indicated by the broken line. T-1, T-2, etc. refer to the tryptic peptides and the numbers underneath to the positions in the chain. Several peptides are pure and give satisfactory analyses without further purification.

Figure 19, Chromatographic separation of peptides BT-3 and pT-13 on a 0,6 X cm column of Dowex 1-X2, The broken line indicates the...

Figure 20. Chromatographic separation of thermolytic fragments of peptide T-9 isolated from the tryptic digest of the AE-p-chain of Hl Sheperds Bush. The Dowex 1-X2 column uxis 60 cm long and had an internal diameter of 0.6 cm. The pH gradient is indicated by the broken line. The fragments are identified bu their sequences and the positions they occupy in the p-chain. The sequence of the abnormal T-9 is given at the top of the figure.

Figure 6 High-speed tryptic fingerprint. Horse cytochrome c was digested with trypsin and the peptide chromatographed in acetonitrile water 0.1% TFA at various temperatures and flow rates on a 15 x 0.2-cm PS-DVB column packed with 3-p, 300-A particles, (a) 26°C and 0.5 ml/min. (b) 42°C and 0.7 ml/min. (c) 70°C and 1.1 ml/min. Detection at 220 nm. Note that the resolution rises with the speed of separation.89 (From Swadesh, ]., BioTechniques, 9, 626, 1990. With permission.)...

Mohammad, J, Jaderlund, B., and Lindblom, K., New polymer-based prepacked column for the reversed-phase liquid chromatographic separation of peptides over the pH range 2-12, J. Chromatogr. A, 852, 255, 1999. 

FIGURE 9.1 Liquid chromatography workflow strategy options in proteomics. (a) bottom-up approach (b) top-down approach (c) selective sample cleanup directly combined with chromatographic separation (d) peptide capture with affinity restricted access material. 

Chloupek, R.C., Hancock, W.S., Marchylo, B.A., Kirkland, J.J., Boyes, B.E., Snyder, L.R. (1994). Temperature as a variable in reversed-phase high-performance liquid chromatographic separations of peptide and protein samples, n. Selectivity effects observed in the separation of several peptide and protein mixtures. J. Chromatogr. A 686, 45-59. 

Dansyl chloride (dimethylaminonaphthalene-5-sulphonyl chloride) will react with free amino groups in alkaline solution (pH 9.5-10.5) to form strongly fluorescent derivatives (Figure 10.14). This method can also be used in combination with chromatographic procedures for amino acid identification in a similar manner to the FDNB reagent but shows an approximately 100-fold increase in sensitivity. This makes it applicable to less than 1 nmol of material and more amenable for use with very small amounts of amino acids liberated after hydrolysis of peptides. The dansyl amino acids are also very resistant to hydrolysis and they can be located easily after chromatographic separation by viewing under an ultraviolet lamp see Procedure 10.1. 

Methods employing low sample volumes (< pL) have been explored, which are aimed at the high-throughput and cost-effective exploration of the design space for chromatographic separations, especially related to bioanalytical techniques focused on large biomolecules analyses (proteins and peptides). 

Chromatographic separation of these mixtures in the elution mode is incapable of resolving many thousands of peptides present in these mixtures, even when orthogonal, two-dimensional separations are performed. The investigator is left with little option for low-abundance peptide iden-tihcation other than affinity approaches that target certain subclasses (e.g., phosphopeptides). While effective for certain applications, the latter allow for enrichment of only a small subset of low-abundance peptides. Because of its potential for broad applicability to the problem of low-abundance peptide enrichment, displacement chromatography remains a technique that offers great possibilities in this area. 

Peptide bonds are cleaved in a nonselective, but not in a completely random manner. Based on anchimeric side-chain assistance, steric factors, and bond strains, acid-labile peptide bonds are predicted to include sites containing Asp, Glu, Ser, Thr, Asn, Gin, Gly, and ProJ22l The disulfide topologies of circulin B and cyclopsychotride, backbone-cyclized peptides with three disulfide bonds, were determined by partial hydrolysis for 5 hours.[22 Occasionally, the bond between adjacent half-cystine residues is cleaved due to the nonselective nature of the mechanism of partial acid hydrolysis.[21] By this procedure, in all cases, a complex mixture of peptide fragments is produced which requires careful chromatographic separation by RP-HPLC for subsequent analysis by mass spectrometry (see Section 6.1.6.2.7). 

Compared to hydrocarbonaceous silica RPC sorbents, not as much commitment has been made to the development of bonded, polar-phase sorbents suitable for the high-performance chromatographic separation of peptides. Due to polar, notably hydrogen bonding, interactions between the peptide and the hydrophilic surface of the sorbent useful selectivity effects can, however, be achieved. In fact, at least two types of separation mechanisms can be identified with bonded polar-phase sorbents. In the first mode, the peptides do not interact per se with the bonded polar-phase sorbent but, rather, are separated on the basis of their ability to permeate into the pores and elute in order of their hydrodynamic volume. In this mode, peptides are separated by steric exclusion effects, with the retention (in terms of elution volume, Ve) of a partial retained peptide, Pb described by the following relationships ... 

High-Performance Ion-Exchange Chromatographic Separation of Peptides... 

Separation by differential electrophoretic mobilities, charge state, and Stokes radii of peptides chromatographic interaction of peptides with the stationary phase both chromatographic interactions and electrophoretic mobility of the peptides... 

Hearn, M.T., M.I. AgnUar, T. Nguyen, and M. Fridman, High-performance liquid chromatography of amino acids, peptides and proteins. LXXXTV. Application of derivative spectroscopy to the study of column residency effects in the reversed-phase and size-exclusion liquid chromatographic separation of proteins. J Chromatogr, 1988. 435(2) 271-84. 

Reduction of the carbonyl in the r >[CO-CH2-NH] link 7 (R1 = H) results in the (hy-droxy)ethyleneamino or r >[CH(OH)-CH2-NH] link 8 (R1 = H), which has proved to be a very potent analogue of the tetrahedral hydrated intermediate of the scissile amide bond. It has been widely used for the design of various inhibitors of HIV protease 141,142 14 154 and ACE, 155-157 and to synthesize angiotensin II, III, and IV analogues. 158,159 Indeed, the chirality of the hydroxylated carbon is critical for HIV protease inhibition, but separation of the epimers may be difficult. Therefore, the stereoselective synthesis from epoxides has been actively investigated. An example of a C-methylated tp[CMe(OH)-CH2-NH] link, obtained from an epoxide with chromatographic separation of the epimers, has also been described. 157 Most of the [(hydroxy)ethyleneamino] peptides have been prepared by solution procedures, but two examples of solid-phase synthesis have been reported. A theoretical study of the (hydroxy)ethyleneamino replacement for the amide bond has been carried out on a HIV protease inhibitor. 160 ... 

---