Riboses, oxidation

It is not known whether the utilization of riboflavin by this organism requires an initial phosphorylation or possibly a cleavage to ribitol. Cells which can attack riboflavin can also oxidize free ribose completely to CO2 and H2O. However, it is concluded that these compounds are oxidized by different enzyme systems since (1) the oxidation of both together is a summation of the oxidation of each separately, and (2) cells not grown on riboflavin and incapable of oxidizing riboflavin still oxidize ribose at a high rate. 

Note Aldoses other than glucose can also be used e.g. arabinose [1], xylose [2, 3, 7] or ribose [4]. The background color is least on cellulose layers when cellulose acetate, aluminium oxide 150, silica gel, RP, NH2 or polyamide layers are employed the background is a more or less intense ochre. The detection limit of carboxylic acids on cellulose layers is ca. 0.5 pg substance per chromatogram zone. 

BOTH RIBOSE-5-P AND NADPH ARE NEEDED BY THE CELL In this case, the first four reactions of the pentose phosphate pathway predominate (Figure 23.37). N/VDPH is produced by the oxidative reactions of the pathway, and ribose-5-P is the principal product of carbon metabolism. As stated earlier, the net reaction for these processes is... 

MORE RIBOSE-5-P THAN NADPH IS NEEDED BY THE CELL Synthesis of ribose-5-P can be accomplished without production of N/VDPH if the oxidative steps of the pentose phosphate pathway are bypassed. The key to this route is the extrac-... 

FIGURE 23.38 The oxidative steps of the pentose phosphate pathway can be bypassed if the primary need is for ribose-5-P. 

Figure 26.6 Vitamin B12 (a) a corrin ring showing a square-planar set of N atoms and a replaceable H, and (b) simplified stmcture of B12. In view of the H displaced from the corrin ring, the Co-C bond, and the charge on the ribose phosphate, the cobalt is formally in the - -3 oxidation state. This and related molecules are conveniently represented as r...

Generally speaking, the phosphorylated deoxysugars undergo the usual reactions of carbohydrates without complication. For instance, both 2-deoxy D-ribose 5-phosphate (52, 59) and 2-deoxy D-xylose 5-phosphate (2) can be reduced to the corresponding 2-deoxy d-erythro- (48) and 2-deoxy D-threo-pentitol 5-phosphates (49). 2-deoxy ribose 5-phosphate has also been oxidized (52) to the corresponding phosphorylated acid (50). 

In theory, periodate oxidation could have given a clear-cut answer as to the composition of the isomeric mixture of deoxy ribose phosphates. The 4-phosphate (73), devoid of vicinal diol groups, should be resistant to periodate the 3-phosphate (74) should reduce one and only one molar equivalent of the oxidant and yield one molar equivalent of both formaldehyde and the phosphorylated dialdehyde (75), whereas the 5-phosphate (76) could be expected to reduce one molar equivalent of periodate relatively rapidly, followed by a slower overoxidation reaction owing to the oxidation of malonaldehyde, formed as a result of the glycol cleavage. 

Jervis used porous silica coated with chemisorbed polyacrylhydrazide for immobilization of adenosine monophosphate (AMP) [117]. After periodate oxidation of its ribose residue the ligand was coupled to the carrier and used for isolation of lactate dehydrogenase from rabbit muscle. The specific capacity was 2 mg of protein/g adsorbent with a ligand content of 10 pmol/g, whereas recovery of enzymatic activity after elution was 85%. Hipwell et al. [118] found that for effective binding of lactate dehydrogenases on AMP-o-aminoalkyl-Sepharose the spacer arm length required at least 4 methylene links. Apparently, a macromolecule of polyacrylhydrazide acts itself like an extended spacer arm and thus allow AMP to bind the enzyme. 

It has been shown already that C-2 of ribose is the precursor of the methyl group, and C-l is eliminated in the biosynthesis. The following observation can be pertinent to the point. Pyrimidine (58) is very unstable and quickly decar-boxylates in aqueous solution at room temperature to give pyramine (Scheme 32).67 Thus, if a C-l -C-2 fragment of the ribose part of AIRs became attached by C-2 to C-2 of a pyrimidine, oxidation of C-l to produce a carboxylic acid function could result in its smooth elimination. 

Triazoline imino sugar derivatives 297 that are prospective glycosidase inhibitors have been prepared as single diastereomers in high yield via an lAOC reaction of in situ generated azido alkene 296 (Eq. 32) [78]. m-CPBA oxidation of the dithioacetal groups in the 0-acetylated 5-azido-5-deoxydibenzyl dithio-acetal of o-xylose or D-ribose 294 to the bis-sulfone 295, followed by loss of HOAc between C-1 and C-2 provided the lAOC precursor 296. 

The pathway has an oxidative phase, which is irreversible and generates NADPH and a nonoxidative phase, which is reversible and provides ribose precursors for nucleotide synthesis. The complete pathway is present only in those tissues having a requirement for NADPH for reductive syntheses, eg, lipogenesis or steroidogenesis, whereas the nonoxidative phase is present in all cells requiring ribose. 

Figure 34-2 illustrates the intermediates and reactions for conversion of a-D-ribose 5-phosphate to inosine monophosphate (IMP). Separate branches then lead to AMP and GMP (Figure 34-3). Subsequent phosphoryl transfer from ATP converts AMP and GMP to ADP and GDP. Conversion of GDP to GTP involves a second phosphoryl transfer from ATP, whereas conversion of ADP to ATP is achieved primarily by oxidative phosphorylation (see Chapter 12).

The most important product of the hexose monophosphate pathway is reduced nicotinamide-adenine dinucleotide phosphate (NADPH). Another important function of this pathway is to provide ribose for nucleic acid synthesis. In the red blood cell, NADPH is a major reducing agent and serves as a cofactor in the reduction of oxidized glutathione, thereby protecting the cell against oxidative attack. In the syndromes associated with dysfunction of the hexose monophosphate pathway and glutathione metabolism and synthesis, oxidative denaturation of hemoglobin is the major contributor to the hemolytic process. 

The structure of hamamelose as 2-C -(hydroxymethyl)-D-ribose has been established by the investigations of Freudenberg and of Schmidt. The studies of the latter author culminated in the chemical synthesis of the lactone which results from the oxidation of hamamelose. 

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