Nucleophilic attack 5-coordination site involvement

Although deprotonation at the benzylic position of arenes coordinated to ruthenium and chromium was reported,27 in the case of the coordinated oxo-ri5-dienyl unit, nucleophilic attack at one terminus of the complexed r 5-dienyl ligand, rather than deprotonation, was expected.28 The reason for the successful deprotonation (even at relatively hindered isopropyl sites) is, according to the authors, the cationic nature of the Cp M fragment. In addition, the transition state for the deprotonation might involve stabilization by the metal (Scheme 3.15). 

Despite the fact that carbonic anhydrase was the first zinc metalloenzyme identified1233 and a good deal is known of its structure, there is still controversy about the nature of the various active-site species and the detailed mechanisms of their action. In particular, the identity of the group with a pXa of 7 that is involved in the mechanism, and the stereochemistry around the zinc ion during catalysis, are still in dispute. The various mechanisms proposed assume either ionization of a histidine imidazole group (bound or not to the zinc) and nucleophilic attack on C02 by the coordinated imidazolate anion,1273,1274 or ionization of the Znn-coordinated water and nucleophilic attack on C02 by OH. 1271 Many papers on this problem have appeared recently and the extensive literature is the subject of the several review articles referred to above. 

The NAD+-dependent alcohol dehydrogenase from horse liver contains one catalytically essential zinc ion at each of its two active sites. An essential feature of the enzymic catalysis appears to involve direct coordination of the enzyme-bound zinc by the carbonyl and hydroxyl groups of the aldehyde and alcohol substrates. Polarization of the carbonyl group by the metal ion should assist nucleophilic attack by hydride ion. A number of studies have confirmed this view. Zinc(II) catalyzes the reduction of l,10-phenanthroline-2-carbaldehyde by lV-propyl-l,4-dihy-dronicotinamide in acetonitrile,526 and provides an interesting model reaction for alcohol dehydrogenase (Scheme 45). The model reaction proceeds by direct hydrogen transfer and is absolutely dependent on the presence of zinc(II). The zinc(II) ion also catalyzes the reduction of 2- and 4-pyridinecarbaldehyde by Et4N BH4-.526 The zinc complex of the 2-aldehyde is reduced at least 7 x 105 times faster than the free aldehyde, whereas the zinc complex of the 4-aldehyde is reduced only 102 times faster than the free aldehyde. A direct interaction of zinc(II) with the carbonyl function is clearly required for marked catalytic effects to be observed. 

There have been a few reports of first generation coordination complex structural models for the phosphatase enzyme active sites (81,82), whereas there are some examples of ester hydrolysis reactions involving dinuclear metal complexes (83-85). Kim and Wycoff (74) as well as Beese and Steitz (80) have both published somewhat detailed discussions of two-metal ion mechanisms, in connection with enzymes involved in phosphate ester hydrolysis. Compared to fairly simple chemical model systems, the protein active site mechanistic situation is rather more complex, because side-chain residues near the active site are undoubtedly involved in the catalysis, i.e, via acid-base or hydrogenbonding interactions that either facilitate substrate binding, hydroxide nucleophilic attack, or stabilization of transition state(s). Nevertheless, a simple and very likely role of the Lewis-acidic metal ion center is to... 

A dynamic model of the catalytic reactions that lead to strand cleavage has been proposed based on structural considerations (22). Assembly is thought to involve coordinate binding of transposase, its DNA substrate(s), and two divalent metal ions. On transposase DNA binding, the two metal ions (H and T for hydrolysis and transfer, respectively Fig. lal) find then-appropriate positions in the active site and are poised for catalysis. Metal ion H orients and activates the water molecule (depicted as OH) for nucleophilic attack. Metal ions T (which... 

A structurally similar active site to that of carboxypeptidase A is found for the endopeptidase thermolysin.77 While several crystallographic and biochemical studies favor a zinc hydroxide mechanism for thermolysin (involving Glu-143 as a general base),80 in an alternative proposed mechanism for this enzyme, the zinc center is proposed to activate the substrate for nucleophilic attack by a non-coordinated water molecule (Scheme 14).81,82... 

Organometallic compounds also undergo reactions of coordinated ligands readily. A simple example involves the susceptibility of coordinated carbon monoxide towards nucleophilic attack. The [Mo(CO)6] complex reacts with methyllithium (6.48), with the new ligand produced at one site also able to undergo additional reactions, not described here. 

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