Nuclear overhauser effects NOEs

You can often use experimental data, such as Nuclear Overhauser Effect (NOE) signals from 2D NMR studies, as restraints. NOE signals give distances between pairs of hydrogens in a molecule. Use these distances to limit distances during a molecular mechanics geometry optimization or molecular dynamics calculation. Information on dihedral angles, deduced from NMR, can also limit a conformational search. 

Another technique often used to examine the stmcture of double-heUcal oligonucleotides is two-dimensional nmr spectroscopy (see AfAGNETiC SPIN resonance). This method rehes on measurement of the nuclear Overhauser effects (NOEs) through space to determine the distances between protons (6). The stmcture of an oligonucleotide may be determined theoretically from a set of iaterproton distances. As a result of the complexities of the experiment and data analysis, the quality of the stmctural information obtained is debated. However, nmr spectroscopy does provide information pertaining to the stmcture of DNA ia solution and can serve as a complement to the stmctural information provided by crystallographic analysis. 

Although experimental studies of DNA and RNA structure have revealed the significant structural diversity of oligonucleotides, there are limitations to these approaches. X-ray crystallographic structures are limited to relatively small DNA duplexes, and the crystal lattice can impact the three-dimensional conformation [4]. NMR-based structural studies allow for the determination of structures in solution however, the limited amount of nuclear overhauser effect (NOE) data between nonadjacent stacked basepairs makes the determination of the overall structure of DNA difficult [5]. In addition, nanotechnology-based experiments, such as the use of optical tweezers and atomic force microscopy [6], have revealed that the forces required to distort DNA are relatively small, consistent with the structural heterogeneity observed in both DNA and RNA. 

One-dimensional nuclear Overhauser effect (NOE), relaxation measurements in native D. gigas Fdll, and analysis of temperature depen-... 

Nuclear Overhauser effect (nOe) The change in intensity in the signal of one nucleus when another nucleus lying spatially close to it is irradiated, with the two nuclei relaxing each other via the dipolar mechanism. Nuclear Overhauser effect correlation spectroscopy (NOESY) A 2D... 

Nuclear Overhauser effects (NOEs) cause changes in the intensity of NMR signals by through-space dipole iipole interactions [36]. The magnitude of an observed NOE between two magnetic nuclei gives useful information on the distances between them. The observed NOE is also related to Brownian... 

Whereas spin decoupling, COSY and TOCSY techniques are used to establish connectivities between protons through bonds, techniques that make use of the nuclear Overhauser effect (NOE), such as 1-D NOE and NOESY, 1- and 2-D GOESY, 1- and 2-D ROESY, can establish connectivities through space. Before looking at these techniques in detail, it s worth spending a little time considering the NOE phenomenon itself - in a nonmathematical manner, of course ... 

Summary The utility of the NMR parameters longitudinal relaxation time (Tj) and nuclear Overhauser effect (NOE) for a deeper insight into the molecular structure and motion of polymer siloxanes was tested. A few characteristic examples of siloxanes investigated were presented to show problems and results. 

The aim of this work was to find out how to get more information about stereochemistry and molecular motion of polymer methyl- and methyl-phenyl-siloxanes by measuring longitudinal relaxation times, Tj, and nuclear Overhauser effects, NOE, of the individual building blocks. 

The relative stereochemistry of hyperaspine 93 was determined by 2-D NMR spectroscopic and mass spectrometry (MS) methods. It has a m-fused bicyclic conformation 93a <2001TL4621>. The trans-fused one is disfavored by an axial pentyl group at C-8 and by a destabilizing dipole-dipole interaction between the N- and O-atoms, which does not exist in the alternative //.(-conformation. The geminal coupling constant of C( 1 )H2 in 93 (11.0 Hz), and that of its 6-hydroxy derivative (11.2 Hz), indicates that they exist preferentially in / //-conformations, whereas their 6-epimers adopt trans-conformations (9.3 and 8.4 Hz, respectively) <2005EJ01378>. Nuclear Overhauser enhancement spectroscopy (NOESY) studies also confirmed the stereochemistry of 93 by the marked nuclear Overhauser effect (NOE) correlation between H-3 and H-4a <20030L5063>. 

On irradiation at 365 nm, compounds 28 undergo ring closure to yield the corresponding triazasemibullvalenes 29, which were unambiguously identified by NMR and IR spectroscopy and conclusive support of the proposed structures comes from nuclear Overhauser effect (NOE) experiments <2002PPS38>. 

Convincing evidence was found that the majority of acyclic aldo-nitrones exist in the Z-form, by investigating the ASIS-effect (aromatic solvent induced shift effect) (399). However, in some cases, specified by structural factors and solvent, the presence of both isomers has been revealed. Thus, in C -acyl-nitrones the existence of Z -and -isomers was detected. Their ratio appears to be heavily dependant on the solvent polar solvents stabilize Z-isomers and nonpolar, E-isomers (399). A similar situation was observed in a- methoxy-A-tert-butylnitrones. In acetone, the more polar Z-isomer was observed, whereas in chloroform, the less polar E-isomer prevailed. The isomer assignments were made on the basis of the Nuclear Overhauser Effect (NOE) (398). /Z-Isomerization of acylnitrones can occur upon treatment with Lewis acids, such as, MgBr2 (397). Another reason for isomerization is free rotation with respect to the C-N bond in adduct (218) resulting from the reversible addition of MeOH to the C=N bond (Scheme 2.74). The increase of the electron acceptor character of the substituent contributes to the process (135). 

As with the COSY experiment, the sequence starts with a pulse followed by an evolution period, but now the mechanism that couples the two spins (which must be in close proximity, typically <6 A) is the Nuclear Overhauser Effect (NOE). The second pulse converts magnetization into population disturbances, and cross-relaxation is allowed during the mixing time. Finally, the third pulse transfers the spins back to the x-y-plane, where detection takes place. The spectrum will resemble a COSY spectrum, but the off-diagonal peaks now indicate through-space rather than through-bond interactions. 

The observed polarization is primarily associated with the former parahydrogen protons. However, other protons may also experience a drastic signal enhancement due to nuclear spin polarization transferred to these nuclei via the nuclear Overhauser effect (NOE) or similar processes, both in the final reaction products as well as in their precursor intermediates. 

When one resonance in an NMR spectrum is perturbed by saturation or inversion, the net intensities of other resonances in the spectrum may change. This phenomenon is called the nuclear Overhauser effect (NOE). The change in resonance intensities is caused by spins close in space to those directly affected by the perturbation. In an ideal NOE experiment, the target resonance is completely saturated by selected irradiation, while all other signals are completely unaffected. An NOE study of a rigid molecule or molecular residue often gives both structural and conformational information, whereas for highly flexible molecules or residues NOE studies are less useful. 

The 1,3-dipolar cycloaddition of imidazolinone 123 with ethyl m-4,4,4-trifluorocrotonate 124 provided, after 36 h at reflux, the regio- and stereoisomer 125 (90%), accompanied with traces of three other unidentified cycloadducts (10%) <2001JFC275>. Compound 125 was isolated in 70% yield (Scheme 15). The structures of the final product were elucidated by nuclear Overhauser effect (NOE) experiments. This high selectivity is the result of a preferred ///////-orientation of both ester and CF3 groups in the transition state and of an impeded ////////-approach of the CFj-substituted terminus of the alkene to the sterically hindered ct-site of 123. 

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