Molecules, flexible folded

Thus, 26 evidently mimics the BPh to QA to Q electron transfer sequence that occurs in the natural reaction center. One might wonder, however, why the lifetime of the final P+-Q-Q 7 state is so short, given the relatively long methylene chains joining the moieties and the much longer lifetimes found for the D-D-A triads. A likely possibility is that the flexible methylene chains allow the molecule to fold back on itself, so that the cation and anion are rather close together and charge... 

IgG antibody molecules are composed of two light chains and two heavy chains joined together by disulfide bonds. Each light chain has one variable domain and one constant domain, while each heavy chain has one variable and three constant domains. All of the domains have a similar three-dimensional structure known as the immunoglobulin fold. The Fc stem of the molecule is formed by constant domains from each of the heavy chains, while two Fab arms are formed by constant and variable domains from both heavy and light chains. The hinge region between the stem and the arms is flexible and allows the arms to move relative to each other and to the stem. 

There is no unanimity in regard to the exact mechanism of ECC formation under high pressure. Wunderlich et al. [11-18] suggested that when a flexible polymer molecule crystallizes from the melt under high pressure, it does not grow in the form of a stable extended chain, rather it deposits as a metastable folded chain. 

As was shown by Floryl), starting from a certain concentration, it is impossible in principle (for purely geometric reasons) to fill a larger fraction of the volume with these chains when they are randomly arranged. This critical concentration depends on chain flexibility which Flory characterized by the fraction f of folded (gauche) isomers in a polymer molecule... 

Locahzed motion can also lead to local variations in correlation times. Folded peptides with unfolded C- or N-terminal residues, for example, will have varying correlation times for the rigid and flexible parts of the molecule, resulting in different cross-relaxation rates. Such effects can usually be distinguished by the Unewidths and intensities of the corresponding diagonal signals, since the autorelaxation rates also depend on the correlation time. 

Real polymer processes involved in polymer crystallization are those at the crystal-melt or crystal-solution interfaces and inevitably 3D in nature. Before attacking our final target, the simulation of polymer crystallization from the melt, we studied crystallization of a single chain in a vacuum adsorption and folding at the growth front. The polymer molecule we considered was the same as described above a completely flexible chain composed of 500 or 1000 CH2 beads. We consider crystallization in a vacuum or in an extremely poor solvent condition. Here we took the detailed interaction between the chain molecule and the substrate atoms through Eqs. 8-10. 

Figure 4.11 (a) The folded or bent conformation of cyclobutane, (b) The bent or envelop form of cyclopentane. In this structure the front carbon atom is bent upward. In actuality, the molecule is flexible and shifts conformations constantly... 

As described above, the arrangement of the various functional moieties was controlled spatially across the films at molecular dimensions in the form of LB films. In a series of folded type of sensitizer (S) and electron-donor (D) dyads in a previous work, however, the dyad molecules in the LB films can take many conformations due to flexibility of the longer alkyl chain of the dyads so that clear dependence of the photoinduced electron transfer rate on the alkyl chain length, i.e. S-D distance, was not observed [2], By this reason, we are studying the chain length dependence by using a series of linear type S-D dyads, in which the S and D moieties were linked by a single alkyl chain. In the closely packed LB films, the alkyl chain was considered to be extended and the distance between S and D to be... 

---