Metal-DNA interactions

Molecular mechanics and dynamics studies of metal-nucleotide and metal-DNA interactions to date have been limited almost exclusively to modeling the interactions involving platinum-based anticancer drugs. As with metal-amino-acid complexes, there have been surprisingly few molecular mechanics studies of simple metal-nucleotide complexes that provide a means of deriving reliable force field parameters. A study of bis(purine)diamine-platinum(II) complexes successfully reproduced the structures of such complexes and demonstrated how steric factors influenced the barriers to rotation about the Pt(II)-N(purine) coordinate bonds and interconversion of the head-to-head (HTH) to head-to-tail (HTT) isomers (Fig. 12.4)[2011. In the process, force field parameters for the Pt(II)/nucleotide interactions were developed. A promising new approach involving the use of ab-initio calculations to calculate force constants has been applied to the interaction between Pt(II) and adenine[202]. 

Mn (0.97, 0.81) Co (0.72) Mg (0.86), and Al (0.58). The solvent exchange rates (Kex S 1) for inner-sphere water molecules in metal ions are Al(10°) Mg (105) Co (105 5), and Mn(106 7) [21].The order of increasing rate constants in acidic solution is, Al Ligand exchange rates take on special importance for Al because they are slow and the system may not be at equilibrium. Mg, Mn, and Co have around 105 faster exchange rate over Al. These differential characteristics of the metals play a crucial role in metal-DNA interactions. 

Hadjiliadis, N. and Sletten, E. (eds) (2009) Metal Complex — DNA Interactions, Wiley-Blackwell, Oxford, UK. Overviews metal-DNA interactions and mechanisms, metallodrugs and toxicity includes a deep coverage of cisplatin. 

MM studies on metal-nueleotide and metal-DNA interactions are dominated by platinum-based anticancer drugs. There have been numerous studies on the interaetion of cisplatin, cis-[PtCl2(NH3)2] with DNA foeusing on the intrastrand adduct between adjaeent guanine bases. 

In situ evaluation of heavy metal-DNA interactions using an electrochemical DNA biosensor. Bioelectrochemistry 72 53-58... 

Oliveira SCB, Corduneanu O, Oliveira-Brett AM (2008) In situ evaluation of heavy metal-DNA interactions using an electrochemical DNA biosensor. Bioelectrochtanistry 72 (l) 53-58. doi 10.1016/j.bioelechem.2007.11.004... 

It is now almost 50 years since the structure of DNA was elucidated by Watson and Crick (1) (Fig. 1). Since then the double helix has become an icon for modern scientific achievement. With the rapid growth of molecular biology and the consequent success of the human genome project (2) we are now firmly in a post-genomic era. However, in spite of, or perhaps because of this, efforts to understand fundamental aspects of metal-ion interactions with DNA continue to be vigorously pursued. 

The influence of DNA on the photo-electron transfer process between a variety of donor-acceptor couples has been examined during the last ten years. For all the systems studied, the metal complex interacts with the DNA and plays the role of electron acceptor or donor in the hydrophobic DNA microenvironment, whereas the other partner of the process, i.e. the reducing or oxidising agent in the ground state, is localised either on the DNA double helix, or does not interact with the nucleic acid and remains in the aqueous phase. Thus three... 

The bleomycins (50) are hardly simple amines, but they do have two NH2 groups and a CONH2 group at the N-terminal domain, as well as potential donor nitrogens in pyrimidine and imidazole, which can complex metal ions." " The complexing of iron to bleomycin" " " has a significant effect on bleomycin-DNA interactions—metal complexes can mediate strand scission—and on alkene oxidation. Both may involve hydroperoxide intermediates." " " " ... 

Currently, only a handful of examples of unique protein carboxylate-zinc interactions are available in the Brookhaven Protein Data Bank. Each of these entries, however, displays syn coordination stereochemistry, and two are bidentate (Christianson and Alexander, 1989) (Fig. 5). Other protein structures have been reported with iyw-oriented car-boxylate-zinc interactions, but full coordinate sets are not yet available [e.g., DNA polymerase (Ollis etal., 1985) and alkaline phosphatase (Kim and Wyckoff, 1989)]. A survey of all protein-metal ion interactions reveals that jyw-carboxylate—metal ion stereochemistry is preferred (Chakrabarti, 1990a). It is been suggested that potent zinc enzyme inhibition arises from syn-oriented interactions between inhibitor carboxylates and active-site zinc ions (Christianson and Lipscomb, 1988a see also Monzingo and Matthews, 1984), and the structures of such interactions may sample the reaction coordinate for enzymatic catalysis in certain systems (Christianson and Lipscomb, 1987). 

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