Metabolic domain

Additional consideration of other components of the QSAR AD, such as the physico-chemical domain, descriptor domain," mechanistic domain and metabolic domain (when possible) would allow even more improved confidence levels in predictive model applications. 

After uptake, lipophilic pollutants tend to move into hydrophobic domains within animals or plants (membranes, lipoproteins, depot fat, etc.), unless they are biotransformed into more polar and water soluble with compounds having low Metabolism of lipophilic compounds proceeds in two stages ... 

The removal of released DA from the synaptic extracellular space to facilitate its intraneuronal metabolism is achieved by a membrane transporter that controls the synaptic concentration. This transporter has been shown to be a 619 amino-acid protein with 12 hydrophobic membrane spanning domains (see Giros and Caron 1993). Although it has similar amino-acid sequences to that of the NA (and GABA) transporter, there are sufficient differences for it to show some specificity. Thus DA terminals will not concentrate NA and the DA transporter is blocked by a drug such as nomifensine which has less effect on NA uptake. Despite this selectivity some compounds, e.g. amphetamine and 6-OHDA (but not MPTP), can be taken up by both neurons. The role of blocking DA uptake in the central actions of cocaine and amphetamine is considered later (Chapter 23). 

Cells Binding, adsorption, partitioning Physical dimensions Metabolism Monolayer integrity Membrane domain characteristics (polarity) surface area transporters, receptors lipid composition charge Cell phenotype and culture conditions... 

At a more molecular level, the influences of the composition of the membrane domains, which are characteristic of a polarized cell, on diffusion are not specifically defined. These compositional effects include the differential distribution of molecular charges in the membrane domains and between the leaflets of the membrane lipid bilayer (Fig. 3). The membrane domains often have physical differences in surface area, especially in the surface area that is accessible for participation in transport. For example, the surface area in some cells is increased by the presence of membrane folds such as microvilli (see Figs. 2 and 6). The membrane domains also have differences in metabolic selectivity and capacity as well as in active transport due to the asymmetrical distribution of receptors and transporters. 

Figure 28 The biophysical model for passive diffusion and concurrent intracellular metabolism of a drug for a simple A-to-B reaction process. Concentration-distance profiles are depicted in the aqueous boundary layer and intracellular domain for the drug and metabolite. The bottom diagram depicts the direction of the fluxes of drug and metabolite viewed from the donor and receiver sides of the cell monolayer. Details of basic assumptions are found in the text.

Kishida, T., Kostetskii, I., Zhang, Z. et al. 2004. Targeted mutation of the MLN64 START domain causes only modest alterations in cellular sterol metabolism. J. Biol. Chem., 279( 18) 19276—19285. 

Similarly, the regulation of PDK activity is modified in adult muscle PDC. For example, PDK activity is inhibited by pyruvate and propionate (metabolites elevated during anaerobic metabolism) and is less sensitive to stimulation by elevated NADH/NAD+ and acetyl CoA/CoA ratios (Fig. 14.2) (Thissen et al, 1986 Chen et al, 1998). The effects of NADH and acetyl CoA on PDK activity are mediated by the degree of E3-catalysed oxidation and E2-catalysed acetylation of the inner lipoyl domain of E2 (Roche and Cate, 1977 Rahmatullah and Roche, 1985, 1987 Ravindran et al, 1996 Yang et al, 1998), so that the regulation of this phenomenon is complex and involves multiple interacting components. 

With data obtained by the analysis of fusion proteins consisting of a domain unrelated to poly(3HB) metabolism (e.g., maltose binding protein MalE or glutathione-S-transferase and the poly(3HB) depolymerase binding domain [57,59-61]. 

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