Transmembrane proteins, lipid interactions

Membrane lipids have no specific interaction with protein transmembrane a helices... 

The artificial lipid bilayer is often prepared via the vesicle-fusion method [8]. In the vesicle fusion process, immersing a solid substrate in a vesicle dispersion solution induces adsorption and rupture of the vesicles on the substrate, which yields a planar and continuous lipid bilayer structure (Figure 13.1) [9]. The Langmuir-Blodgett transfer process is also a useful method [10]. These artificial lipid bilayers can support various biomolecules [11-16]. However, we have to take care because some transmembrane proteins incorporated in these artificial lipid bilayers interact directly with the substrate surface due to a lack of sufficient space between the bilayer and the substrate. This alters the native properties of the proteins and prohibits free diffusion in the lipid bilayer [17[. To avoid this undesirable situation, polymer-supported bilayers [7, 18, 19] or tethered bilayers [20, 21] are used. 

Once synthesized several factors influence the particular leaflet of the membrane lipid bilayer where the lipids reside. One is static interactions with intrinsic and extrinsic membrane proteins which, by virtue of their mechanism of biosynthesis, are also asymmetric with respect to the membrane. The interaction of the cytoplasmic protein, spectrin with the erythrocye membrane has been the subject of a number of studies. Coupling of spectrin to the transmembrane proteins, band 3 and glycophorin 3 via ankyrin and protein 4.1, respectively, has been well documented (van Doit et al, 1998). Interaction of spectrin with membrane lipids is still somewhat conjectural but recent studies have characterized such interactions more precisely. O Toole et al. (2000) have used a fluorescine derivative of phosphatidylethanolamine to investigate the binding affinity of specttin to lipid bilayers comprised of phosphatidylcholine or a binary mixture of phosphatidylcholine and phosphatidylserine. They concluded on the basis... 

A further remarkable feature of many transmembrane proteins of known structure is the presence of Tyr and Trp residues at the interface between lipid and water (Fig. 11-12). The side chains of these residues apparently serve as membrane interface anchors, able to interact simultaneously with the central lipid phase and the aqueous phases on either side of the membrane. 

Although DSC and other physical techniques have made considerable contributions to the elucidation of the nature of lipid-protein interactions, several outstanding questions remain. For example, it remains to be dehnitively determined whether some integral, transmembrane proteins completely abolish the cooperative gel-to-liquid-crystalline phase transition of lipids with which they are in direct contact or whether only a partial abolition of this transition occurs, as is suggested by the studies of the interactions of the model transmembrane peptides with phospholipids bilayers (see above). The mechanism by which some integral, transmembrane proteins perturb the phase behavior of very large numbers of phospholipids also remains to be determined. Finally, the molecular basis of the complex and unusual behavior of proteins such as the concanavalin A receptor and the Acholeplasma laidlawii B ATPase is still obscure (see Reference 17). 

In contrast, proteins vary markedly in their lateral mobility. Some proteins are nearly as mobile as lipids, whereas others are virtually immobile. For example, the photoreceptor protein rhodopsin (Section 32.3.1). a very mobile protein, has a diffusion coefficient of 0.4 pm s f The rapid movement of rhodopsin is essential for fast signaling. At the other extreme is fibronectin, a peripheral glycoprotein that interacts with the extracellular matrix. For fibronectin, D is less than 10-4 pm2 s f Fibronectin has a very low mobility because it is anchored to actin filaments on the inside of the plasma membrane through integrin, a transmembrane protein that links the extracellular matrix to the cytoskeleton. 

FIGURE 5-11 Diagram of how various ciasses of proteins associate with the iipid biiayer. Integral (transmembrane) proteins span the bIlayer. LIpId-anchored proteins are tethered to one leaflet by a long covalently attached hydrocarbon chain. Peripheral proteins associate with the membrane primarily by specific noncovalent Interactions with Integral proteins or membrane lipids. 

For antibodies to penetrate inside fixed cells, the membranes must be opened with detergents. Membranes are lipid bilayers that have a hydrophilic or water-soluble side facing the cytoplasm and the extracellular space (Fig. 5.4a). The hydrophobic or water-insoluble sides face each other at the center of the membrane. Also, there are transmembrane proteins that interact with the lipids and are held in the membrane. Membranes are barriers because they do not allow water or hydrated molecules to pass. For immunocytochemistry, the membrane must be parhally dissolved to allow antibodies to cross. It is also important that the transmembrane proteins remain cross-linked to other proteins so that they are not washed away (Fig. 5.4b). Detergent will dissolve the membranes but not the transmembrane proteins, which are cross-linked by the fixative to other proteins (e.g., scaffold proteins). For tissue sections, antibodies must penetrate through many cell layers into the center of the section. Achieving this depth of penetration requires removing most of the cell membranes but leaving the proteins so that they can bind antibodies when needed. 

White, S.H. and von Heijne, G., Do protein-lipid interactions determine the recognition of transmembrane helices at the ER translocon , Biochem Soc Trans 33 (2005) 1012-1015. 

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