Isoprenoid pathway metabolites derived from

Metabolites Derived from the Isoprenoid Pathway Sesquiterpenes... 

More than half of the reported secondary metabolites from macroalgae are isoprenoids. Terpenes, steroids, carotenoids, prenylated quinines, and hydroqui-nones make up the isoprenoid class, which is understood to derive from either the classical mevalonate pathway, or the mevalonate-independent pathway (Stratmann et al. 1992). Melavonic acid (MVA) (Fig. 1.2) is the first committed metabolite of the terpene pathway. Dimethylallyl (dl meth al lal) pyrophosphate (DMAPP) (Fig. 1.3) and its isomer isopentenyl pyrophosphate (IPP, Fig. 1.3) are intermediates of the MVA pathway and exist in nearly all life forms (Humphrey and Beale 2006). Geranyl (ja ran al) (C10) and famesyl (C15) units are generated by head-to-tail (Fig. 1.3) condensation of two (for C10) or three (for C15) 5-carbon DMA-like isoprene units, identifiable in final products by the characteristic fish-tail repeating units, as traced over the structure of a sesquiterpene in Fig. 1.3 (Humphrey and Beale 2006). Additional IPP condensation with famesyl pyrophosphate (FPP)... 

As presented in Table 1.2, over half of reported marine natural products are derived from the isoprenoid biosynthetic pathway (56%), with the remainder split mainly between amino acid (19%) and acetogenin (20%) pathways. Secondary metabolites falling into the categories of nucleic acids and carbohydrates comprise only 1%. Such low levels are somewhat surprising given the fundamental importance of such classes of compounds as primary metabolites. 

Metabolites of the phylum Porifera account for almost 50% of the natural products reported from marine invertebrates. Of the 2609 poriferan metabolites, 98% are derived from amino acid, acetogenin, or isoprenoid pathways. Isoprenoids account for 50% of all sponge metabolites, while amino acid and polyketide pathways account for 26% and 22%, respectively. A significant number of sponge metabolites appear to be derived from mixed biosynthetic pathways. Most structures reported containing carbohydrate moieties were glycosides. 

Figure 1 The retrobiosynthetic principle. Labeling patterns of central metabolic intermediates (shown in yellow boxes) are reconstructed from the labeling patterns of sink metabolites, such as protein-derived amino acids, storage metabolites (starch and lipids), cellulose, isoprenoids, or RNA-derived nucleosides. The reconstruction is symbolized by retro arrows following the principles of retrosynthesis in synthetic organic chemistry. The figure is based on known biosynthetic pathways of amino acids, starch, cellulose, nucleosides, and isoprenoids in plants. The profiles of the central metabolites can then be used for predictions of the labeling patterns of secondary metabolites. In comparison with the observed labeling patterns of the target compounds, hypothetical pathways can be falsified on this basis.

Marine macroalgae produce a wide variety of intriguing and diverse isoprenoid structures derived from C5 isoprene units, and many reports have been published on the ecological roles of these metabolites. Marine terpenoids are frequently found with halogenated functionalities and one or more rings, which can have important implications for their biological activities. Isoprenoid metabolites are derived via the classical mevalonate pathway or the more recently discovered deoxyxylulose phosphate pathway. Isoprenoids are... 

It should be noted that isoprenoid biosynthesis requires acetyl-CoA, ATP, and NADPH. The physiological source of these compounds is presumably sugar phosphate metabolism, via glycolysis and the pentose phosphate pathway. We show sucrose as the starting material in Fig. 1, since it is the principal transport sugar in plants. Free acetate is not an important metabolite in plants acetyl-CoA is normally derived from pyruvate formed in glycolysis. Biosynthesis of terpenes implies that acetyl-CoA is diverted from the Krebs cycle and that the energy available from the Krebs cycle and oxidative phos-... 

The evidence that (- )-shikimic acid plays a central role in aromatic biosynthesis was obtained by Davis with a variety of nutritionally deficient mutants of Escherichia coli. In one group of mutants with a multiple requirement for L-tyrosine, L-phenylalanine, L-tryptophan and p-aminobenzoic acid and a partial requirement for p-hydroxybenzoic acid, (—)-shikimic acid substituted for all the aromatic compounds. The quintuple requirement for aromatic compounds which these mutants displayed arises from the fact that, besides furnishing a metabolic route to the three aromatic a-amino acids, the shikimate pathway also provides in micro-organisms a means of synthesis of other essential metabolites, and in particular, the various isoprenoid quinones involved in electron transport and the folic acid group of co-enzymes. The biosynthesis of both of these groups of compounds is discussed below. In addition the biosynthesis of a range of structurally diverse metabolites, which are derived from intermediates and occasionally end-products of the pathway, is outlined. These metabolites are restricted to certain types of organism and their function, if any, is in the majority of cases obscure. 

Branched-chain amino acids as precursurs of plant isoprenoids L-Leucine and L-valine, when fed to germinating pea seeds (Pisum sativum) were incorporated into squalene and 6-amyrin [39]. Chemical degradation by ozonolysis of the radioactive squalene revealed an equal distribution of the radioactivity in the IPP-derived (4 portions per molecule) and the DMAPP-derived moieties (2 portions per molecule). However, an unbalanced distribution in favor of the DMAPP-derived moiety of monoterpenoids was found after feeding radioisotopically labeled L-leucine, L-valine, DL-alanine, acetate, and R,S-MVA to intact plants of Cinnamomum camphora and of Pelargonium roseum [40]. The relatively low incorporation of amino acids was explained by several hypotheses a) the radioactivity of amino acids is scattered into other metabolites rather than monoterpenoids b) there is a great pool of the amino acids which leads to dilution of radioactivity, and c) the low permeation of the amino acids into the biosynthetic site of monoterpenoids [40]. The DMAPP-derived moiety of monoterpenoids, biosynthesized from [U- C]leucine and [U- ]valine was labeled with more than 64% of the incorporated tracers, while this moiety when derived from [2- " C]MVA contained less than 32% of the tracers [40]. This lends support to the interpretation that both amino acids are incorporated not via MV A, but by an alternate route, e,g, a combination of the well known mammalian leucine degradation pathway and a reversal of the MVA shunt (see below). The distribution pattern in monoterpenoids after administration of [2- ]alanine was similar to that after incorporation of MVA, which indicates that alanine is first metabolized to acetyl-CoA, which then constructs preferentially the IPP-derived moiety of the monoterpenoids via MVA [40]. 

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