Isomerization bound

Fi re 12.6 Schematic diagram Illustrating the proton movements in the photocycle of bacteriorhodopsin. The protein adopts two main conformational states, tense (T) and relaxed (R). The T state binds trans-tetinal tightly and the R state binds c/s-retinal. (a) Stmcture of bacteriorhodopsin in the T state with hflus-retinal bound to Lys 216 via a Schiff base, (b) A proton is transferred from the Schiff base to Asp 85 following isomerization of retinal and a conformational change of the protein. 

The yellow form is stable at room temperature but isomerizes on warming in the solid state or solution. EXAFS measurements indicate that the yellow form has Pt bound to N and S (i.e. the thiocyanate is S-bonded) while the red form has no Pt-S bonds (Figure 3.77) therefore, the thiocyanate is N-bonded (there are also indications of distant Pt-Pt contacts (3.2 A), possibly by stacking of the planar Pt(bipy)(NCS)2 units). 

In the first step bromocriptine 2 is isomerized to 2a, followed by an attack on proline ring in aminocyclol moiety of the molecule (formation of a new double bound on lO -ll, and bromination). This dibromo-compound 5 is brominated additionally on C-2 -propyl group. Tribromo-compound fi is very lipophilic and practically devoid of pharmacological activity. Hydroxy group and amide groups remain intact after all these reactions. 

Citrate is isomerized to isocitrate by the enzyme aconitase (aconitate hydratase) the reaction occurs in two steps dehydration to r-aconitate, some of which remains bound to the enzyme and rehydration to isocitrate. Although citrate is a symmetric molecule, aconitase reacts with citrate asymmetrically, so that the two carbon atoms that are lost in subsequent reactions of the cycle are not those that were added from acetyl-CoA. This asymmetric behavior is due to channeling— transfer of the product of citrate synthase directly onto the active site of aconitase without entering free solution. This provides integration of citric acid cycle activity and the provision of citrate in the cytosol as a source of acetyl-CoA for fatty acid synthesis. The poison fluo-roacetate is toxic because fluoroacetyl-CoA condenses with oxaloacetate to form fluorocitrate, which inhibits aconitase, causing citrate to accumulate. 

This approximates to unity if [A] is either very large or very small. In between, H may be as much as 2 for very large values of E. It is noteworthy that this should be so even though the affinities for the first and the second binding steps have been assumed to be the same, provided only that some isomerization of the receptor to the active form occurs. This is because isomerization increases the total amount of binding by displacing the equilibria shown in Eq. (1.9) to the right — that is, toward the bound forms of the receptor. 

Amides offer both O and N-donors for Co coordination. N-bound amides are accessible through hydrolysis of their corresponding coordinated nitrile or by linkage isomerization of the O-bound form. The preparation of an extensive series of pentaamminecobalt(III) complexes of (monoden-tate-coordinated) amides of the form RCONH2 (R = H, Me, CF3, CH2C1, CH2F, CH=CH2, Ph,... 

The ammonioacetonitrile complex (206) reacts with NH3 to produce the amidine-bonded aminoacetamidine (207) complex, whereas in aqueous base it hydrolyzes to the amid o-A -bo ruled glycinamide complex (208).908 Acid-catalyzed linkage isomerization to first the O-bound form (209) precedes formation ultimately of the amino-bonded isomer (210) as the stable product upon deprotonation of the free amine above pH 6. 

Carbamates (R2NCOOR ) may be O or N bonded. Base-promoted isomerization of carbamates from the O- to the deprotonated A--bound form in pentaamminecobalt(III) complexes have been defined.986... 

Thiocarbamate (tc, RHNCSO-) is a monodentate ambidentate ligand, and both oxygen- and sulfur-bonded forms are known for the simple pentaamminecobalt(III) complexes. These undergo redox reactions with chromium(II) ion in water via attack at the remote O or S atom of the S- and O-bound isomers respectively, with a structural trans effect suggested to direct the facile electron transfer in the former.1045 A cobalt-promoted synthesis utilizing the residual nucleophilicity of the coordinated hydroxide in [Co(NH3)5(OH)]2+ in reaction with MeNCS in (MeO)3PO solvent leads to the O-bonded monothiocarbamate, which isomerizes by an intramolecular mechanism to the S-bound isomer in water.1046... 

Optical activity in metal complexes may also arise either if one of the ligands bound to the metal in the first co-ordination sphere is itself optically active or if the complex as a whole lacks a centre of inversion and a plane of symmetry. Thus all octahedral cts-complexes of the tris-or bis-chelate type have two isomeric forms related by a mirror plane, the d- and /-forms. These species have circular dichroism spectra of identical intensities but opposite in sign. The bands in the circular dichroism spectrum are, of course, modified if ligand exchange occurs but they are also exceedingly sensitive to the environment beyond the first co-ordination sphere. This effect has been used to obtain association constants for ion-pair formation. There also exists the possibility that, if such compounds display anti-tumour activity, only one of the mirror isomers will be effective. 

Wakatsuki et al. (4) proposed vinyl complex, 5, and presented DFT results supporting isomerization to a vinylidene hydride as the rate determining step. Our results indicate that the rate determining step involves H-OH bond breaking and that protonation of a bound alkyne is the rate determining step in this... 

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