Ionization methods, mass structures

Ionization Method Type of Molecular Ion Formed Good Molecular Mass Information Abundant Fragment Ions MS/MS Needed for Structural Information Accurate Values for Isotope Ratios... 

Chapter 12, Structure Determination Mass Spectrometiy and Infrared Spectroscopy—A new Section 12.4 discusses mass spectrometry of biological molecules, focusing on time-of-flight instruments and soft ionization methods such as MAI.DI. 

For many years, electron ionization, then more usually known as electron impact, was the only ionization method used in analytical mass spectrometry and the spectra encountered showed exclusively the positively charged species produced during this process. Electron ionization also produces negatively charged ions although these are not usually of interest as they have almost no structural significance. Other ionization techniques, such as Cl, FAB, thermospray, electrospray and APCI, however, can be made to yield negative ions which are of analytical utility. 

When optimum experimental conditions have been obtained, all of the mobile phase is removed before the analyte(s) are introduced into the mass spectrometer for ionization. As a consequence, with certain limitations, it is possible to choose the ionization method to be used to provide the analytical information required. This is in contrast to the other LC-MS interfaces which are confined to particular forms of ionization because of the way in which they work. The moving belt can therefore provide both electron and chemical ionization spectra, yielding both structural and molecular weight information. 

Electrospray is a soft-ionization method prodncing intact molecular species and structural information is not usually available. Electrospray sources are capable of producing structural information from cone-voltage fragmentation but these spectra are not always easily interpretable. Experimentally, the best solution is to use a mass spectrometer capable of MS-MS operation but this has not inconsequential financial implications. 

In soft ionization methods the excess energy deposited onto the ionized molecule is very small and stable even-electron ions are formed. This leads to easy determination of the molecular weight of the analyte, but as fragmentation is absent or it occurs to a very low extent, structural information is missing in the mass spectrum. However, one can obtain structural information by causing ion fragmentation out of the source by means of tandem mass spectrometry experiments (see below). 

Mass spectrometry is an analytical technique to measure molecular masses and to elucidate the structure of molecules by recording the products of their ionization. The mass spectrum is a unique characteristic of a compound. In general it contains information on the molecular mass of an analyte and the masses of its structural fragments. An ion with the heaviest mass in the spectrum is called a molecular ion and represents the molecular mass of the analyte. Because atomic and molecular masses are simple and well-known parameters, a mass spectrum is much easier to understand and interpret than nuclear magnetic resonance (NMR), infrared (IR), ultraviolet (UV), or other types of spectra obtained with various physicochemical methods. Mass spectra are represented in graphic or table format (Fig. 5.1). 

Stereochemical aspects in mass spectrometry have aroused more and more interest. El mass spectra of stereoisomers are practically indistinguishable. However, the use of soft ionization methods (chemical ionization, field ionization, etc.) accompanied by tandem mass spectrometry allows important and reliable conclusions on the molecular structures to be drawn. 

The only method for structural elucidation that is also applicable to mixtures is mass spectrometry, mainly when electrospray ionization (ESI) is used and precursor ions are investigated. Not all types of compounds, however, are accessible by this method, and, due to insufficient charge stabilization, compounds like labilomycin are not visible in the ESI spectra of crude extracts. As pure compounds are needed for further biological testing anyway, mixtures have to be separated before analysis. 

The purpose of the MS techniques is to detect charged molecular ions and fragments separated according to their molecular masses. Most flavonoid glycosides are polar, nonvolatile, and often thermally labile. Conventional MS ionization methods like electron impact (El) and chemical ionization (Cl) have not been suitable for MS analyses of these compounds because they require the flavonoid to be in the gas phase for ionization. To increase volatility, derivatization of the flavonoids may be performed. However, derivatization often leads to difficulties with respect to interpretation of the fragmentation patterns. Analysis of flavonoid glycosides without derivatization became possible with the introduction of desorption ionization techniques. Field desorption, which was the first technique employed for the direct analysis of polar flavonoid glycosides, has provided molecular mass data and little structural information. The technique has, however, been described as notorious for the transient... 

A considerable amount of information has been accumulated during the review period with respect to fragmentation studies of flavonoid aglycones and their glycosides using ionization techniques such as El and CID (Figure 2.17). Tandem mass spectrometry with soft ionization methods such as FAB, ESI, and APCI have been used for the structural characterization of a variety of flavonoids, and both deprotonation ° ° and... 

To summarize, mass spectrometry has successfully been used for the identification of compounds containing a Zn—C bond, which have a large diversity of structures and complexity. These complexes have been subjected to different ionization methods (such as El, Cl, EAB and ESI) and in many cases they generated numerous Zn-containing fragment ions. Under soft (Cl or FAB) experimental conditions, some of these compounds produced protonated molecules [M-t-H]" " or even protonated dimerlike species [M2H — R]+. Electron ionization was successful for the characterization of many volatile Zn-containing compounds. Peaks of molecular ions M+ were frequently observed, but the majority of the mass spectra were dominated by Zn—C bond dissociation products. 

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