Ion structure elucidation

Here again, principles of ion structure elucidation have been applied, although structure determination has not been the aim of the study. However, if an ion structure has to be elucidated, as many findings as possible about the ion in question must be collected and compared with one another. This has been accom-... 

Figure 5.45 Structures of (1) Bosentan (C27H29N5O6S [M + H]+ 552.1917) and three of its metabolites, formed by (2) oxidation (C27H29N5O7S [M + H]+ 568.1866), (3) demethylation (C26H27N5O6S [M- -H]+ 538.1760), and (4) demethylation-oxidation (C26H27N5O7S [M + M]+ 554.1709). Reprinted by permission of Elsevier Science from Exact mass measurement of product ions for the structural elucidation of drug metabolites with a tandem quadrupole orthogonal-acceleration time-of-flight mass spectrometer , by Hopfgartner, G., Chemushevich, I. V., Covey, T., Plomley, 1. B. and Bonner, R., Journal of the American Society for Mass Spectrometry, Vol. 10, pp. 1305-1314, Copyright 1999 by the American Society for Mass Spectrometry.

The MAB ion source offers several advantages over El for PyMS. By eliminating excessive fragmentation, characteristic of electron ionisation, and by producing highly reproducible mass spectra MAB (Kr) greatly simplifies the analysis of pyrolysis data. Furthermore, MAB ionisation, when combined to MS/MS, provides a useful tool for structural elucidation of pyrolysis products. The ability for selective ionisation can be very useful to reduce the background combination in techniques such as GC-MS, LC-MS or SFC-MS. 

Ion trap MS is particularly suited for chemical structure elucidation, as it allows for simultaneous ion storage, ion activation and fragmentation, and product ion analysis. The fragmentation pathway of selected ions and the fragmentation products provide information on the molecular structure. Compared with triple-quadrupole and especially with sector instruments, the ion trap instrument provides more efficient conversion of precursor ion into product ions. However, the CID process via resonance excitation, although quite efficient in terms of conversion yield, generally results in only one (major) product ion in the product-ion mass spectrum. MS/MS with a quadrupole ion trap offers a number of advantages ... 

Table VII gives a survey of alkaloids that exhibit the hasubanonine-type cleavage. The characteristic fragmentation pattern of this group, possessing an a,/ -unsaturated carbonyl group in ring C, is significantly different from other groups. In the case of hasubanonine (5) (3), the most abundant and nitrogen-free ion peak was observed at m/z 315, which is important for structure elucidation of this group (2,73).

Detection by LDMS and structural elucidation of other secondary metabolite products, generated in the host during the onset of the parasite disease, is discussed. These molecules may serve as additional biomarkers for rapid malaria diagnosis by LDMS. For instance, choline phosphate (CP) is identified as the source of several low-mass ions observed in parasite-infected blood samples in addition to heme biomarker ions. The CP levels track the sample parasitemia levels. This biomarker can provide additional specificity and sensitivity when compared to malaria detection based on heme ion signals alone. Furthermore the observed elevated CP levels are discussed in the context of Plasmodium metabolism during its intra-erythrocytic life cycle. These data can... 

The importance of alkali metal binding with available 7r-electron density in the formation of CIPs was also demonstrated by Niemeyer in the structural elucidation of the first monomeric non-solvated lithium cuprate, [(2,6-Mcs2(LI L)2CuLi] 450, formed from the reaction of 2 equiv. of (2,6-Mcs2Gf,I L)Li with /-BuOCu in pentane.447 The complex crystallizes as two different independent molecules in which the C-Cu-C angles differ (171.1° and 173.8°) as does the mode of coordination to the Li cations C pso and rf to one pendant Ph in molecule 1, with an additional rf interaction to a second Ph group in molecule 2. In the second molecule, the Li site is 10% occupied by a Cu ion. 

Various analyzers have been used to analyze phenolic compounds. The choice of the MS analyzer is influenced by the main objective of the study. The triple quadrupole (QqQ) has been used to quantify, applying multiple reaction monitoring experiments, whereas the ion trap has been used for both identification and structure elucidation of phenolic compounds. Moreover, time-of-flight (TOF) and Fourier-transform ion cyclotron resonance (FT-ICR) are mainly recommended for studies focused on obtaining accurate mass measurements with errors below 5 ppm and sub-ppm errors, respectively (Werner and others 2008). Nowadays, hybrid equipment also exists, including different ionization sources with different analyzers, for instance electrospray or atmospheric pressure chemical ionization with triple quadrupole and time-of-flight (Waridel and others 2001). 

Unlike silyl radicals and silylium ions that have been elusive for a long time, silyl anions (silanides) are well known since the pioneering work of Gilman etal. in the 1960s. Two literature reviews on silyl anions by Lickiss and Smith as well as Tamao appeared in 1995. Many structural elucidations and reactivity studies of silyl anions have been... 

ESI-MS-MS permitted unambiguous identification and structure elucidation of compounds detected under NI conditions (halogenated NPECs and NPs), while for NPEOs, detected under positive ionisation conditions no fragmentation was obtained and these compounds were analysed using a single stage MS as [M + Na]+ in selected ion... 

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