Intramolecular reactions mechanisms

Figure 4 Proposed intramolecular reaction mechanism for 4-nitrophenyl picolinate hydrolysis by Scrimin s metallomicelle 7. See text for details.

The observed stereospecificity of the reaction in the conversion of l-(p-nitro-benzoyl)-2-benzylaziridine in refluxing toluene into A -( ra/w)-cinnamyl-p-nitro-benzamide is best explained in terms of an intramolecular reaction mechanism in which cis elimination of a proton is concerted with opening of the aziridine ring (A)... 

The intramolecular reaction mechanism for hemoglobin oxidation proposed by Lemberg and Legge in which only the intermediate Hb4(02)2 undergoes a reaction has been discussed above. The fact that the mechanism cannot account for the oxidation at high oxygen pressures makes it... 

Intramolecular reaction of the allenyl carbamate 5 in the presence of a large excess of allylic chloride catalyzed by Pdi(dba)3 or PdCl2(PhCN)2 affords the substituted oxazolidin-2-one 6. Since the reaction is catalyzed by both Pd(II) and Pd(0), its mechanism is not dear[3]. 

Studies of the reaction mechanism of the catalytic oxidation suggest that a tit-hydroxyethylene—palladium 7t-complex is formed initially, followed by an intramolecular exchange of hydrogen and palladium to give a i yW-hydtoxyethylpalladium species that leads to acetaldehyde and metallic palladium (88-90). 

The mechanisms available to intramolecular reactions are the same as those of intermolecular reactions. The same problems of kinetic equivalence of rate terms may arise, and Table 6-3 shows some kinetically equivalent mechanisms for intramolecular reactions of the acyl function. The efficiency of intramolecular reactivity may be difficult to assess. One technique, described above as a method for the detection of an intramolecular reaction, is to make a comparison with an analog incapable of the intramolecular process. Thus p-nitrophenyl 5-nitrosalicylate, 17, hydrolyzes about 2500 times faster than p-nitrophenyl 2-methoxy-5-nitrobenzoate, 18. 

For this example EM = 1260 M. In ealculating EM it is necessary that the intermolecular reaction selected for the comparison possess the same mechanism as the intramolecular reaction. 

The reaction mechanism " is not rigorously known. Evidence for an intramolecular pathway as well as an intermolecular pathway has been found ... 

The suggested reaction mechanism involves a nucleophilic attack of the imine nitrogen at the activated triple bond, followed by a proton exchange, to give a benzimidazolinium system which, by intramolecular attack at the carbonyl group, leads to an epoxide that ring opens to the observed product. For the ethyl derivative (R = Et) a tub conformation could be established by X-ray crystallographic analysis.33... 

Shimomura, O., Johnson, F. H., and Morise, H. (1974b). Mechanism of the luminescent intramolecular reaction of aequorin. Biochemistry 13 3278-3286. 

Table 10.4 lists the rate parameters for the elementary steps of the CO + NO reaction in the limit of zero coverage. Parameters such as those listed in Tab. 10.4 form the highly desirable input for modeling overall reaction mechanisms. In addition, elementary rate parameters can be compared to calculations on the basis of the theories outlined in Chapters 3 and 6. In this way the kinetic parameters of elementary reaction steps provide, through spectroscopy and computational chemistry, a link between the intramolecular properties of adsorbed reactants and their reactivity Statistical thermodynamics furnishes the theoretical framework to describe how equilibrium constants and reaction rate constants depend on the partition functions of vibration and rotation. Thus, spectroscopy studies of adsorbed reactants and intermediates provide the input for computing equilibrium constants, while calculations on the transition states of reaction pathways, starting from structurally, electronically and vibrationally well-characterized ground states, enable the prediction of kinetic parameters. 

Although the reaction mechanism of this type of reactions is not fully elucidated, it is easily anticipated that no intramolecular special stabilization effect for the carbanion generated from decarboxylation is expected, different from the case of malonic acid-type compounds. Moreover, cinnamic acid derivatives that have both the electron-donating and withdrawing substituents have been reported to undergo this reaction. This fact suggests that the enzyme itself stabilizes the transition state without the aid of mesomeric and inductive effects of the other part of the substrate molecule itself. If such unknown mechanism also works for other... 

Since activation of the N-H bond of PhNHj by Ru3(CO)i2 has been reported to take place under similar conditions [306], it has been proposed that the reaction mechanism involves (i) generation of an anUido ruthenium hydride, (ii) coordination of the alkyne, (iii) intramolecular nucleophilic attack of the nitrogen lone pair on the coordinated triple bond, and (iv) reductive ehmination of the enamine with regeneration of the active Ru(0) center [305]. 

This chapter compares the reaction of gas-phase methylation of phenol with methanol in basic and in acid catalysis, with the aim of investigating how the transformations occurring on methanol affect the catalytic performance and the reaction mechanism. It is proposed that with the basic catalyst, Mg/Fe/0, the tme alkylating agent is formaldehyde, obtained by dehydrogenation of methanol. Formaldehyde reacts with phenol to yield salicyl alcohol, which rapidly dehydrogenates to salicyladehyde. The latter was isolated in tests made by feeding directly a formalin/phenol aqueous solution. Salicylaldehyde then transforms to o-cresol, the main product of the basic-catalyzed methylation of phenol, likely by means of an intramolecular H-transfer with formaldehyde. With an acid catalyst, H-mordenite, the main products were anisole and cresols moreover, methanol was transformed to alkylaromatics. 

Triple bonds can also participate in the metathesis reaction. Intramolecular reactions give vinylcycloalkenes, whereas intermolecular reactions provide conjugated dienes.301 The mechanism is similar to that for a, to-diene metathesis, but in contrast Reactions involving to diene cyclization, no carbon atoms are lost.302... 

A current overall picture of the reaction mechanism of xanthine oxidase, which differs substantially from one proposed earlier (87) is as follows. The enzyme is presumed to have two independent catalytic units, though this has not so far been proved rigorously. Reducing substrates are bound at molybdenum and reduce this from Mo(VI) both to Mo(V) and to Mo (IV). Reducing equivalents are then transferred by intramolecular reactions from molybdenum to iron-sulphur and also, either directly or via this, to flavin. Oxidizing substrates as a class, seem capable of reacting with all three types of centre in the enzyme. Thus, oxygen reacts predominantly with flavin, phenazine methosulphate... 

Thermally induced intra-intermolecular criss-cross cycloaddition of nonsymmetrical azines 363 in the presence of phenyl isocyanate provides the corresponding products of the mixed criss-cross cycloaddition 364 (Scheme 55) <2002TL6431>. Two different reaction mechanisms, intra-intermolecular and inter-intramolecular, of the mixed criss-cross cycloaddition with opposite sequence of reaction steps are possible. Quantum chemistry calculations suggest the intra-intermolecular mechanism as the most probable mechanism of this reaction <2004CCC231>. 

Intramolecular oxonium ylide formation is assumed to initialize the copper-catalyzed transformation of a, (3-epoxy diazomethyl ketones 341 to olefins 342 in the presence of an alcohol 333 . The reaction may be described as an intramolecular oxygen transfer from the epoxide ring to the carbenoid carbon atom, yielding a p,y-unsaturated a-ketoaldehyde which is then acetalized. A detailed reaction mechanism has been proposed. In some cases, the oxonium-ylide pathway gives rise to additional products when the reaction is catalyzed by copper powder. If, on the other hand, diazoketones of type 341 are heated in the presence of olefins (e.g. styrene, cyclohexene, cyclopen-tene, but not isopropenyl acetate or 2,3-dimethyl-2-butene) and palladium(II) acetate, intermolecular cyclopropanation rather than oxonium ylide derived chemistry takes place 334 ). 

A novel series of 5//-thiazolo[3,2-a]pyridine-5-ones 64 is prepared by addition of malonic esters 59 to 2-alkynylthiazoles 60 <06H(67)523>. A plausible reaction mechanism involves an intramolecular cyclization of the initial adduct 61 to give the cyclobutenoxide intermediate 62. Ring-opening of this intermediate and subsequent cyclization lead to 5//-thiazolo[3,2-a]pyridine-5-one 64. 

The use of mesitoate esters in the elucidation of reaction mechanisms has been pioneered by Burrows and Topping (1969,1970). This system has been used to suppress the competitive intermolecular reaction by steric bulk effects and to detect participation by the identification of the products formed. Under identical conditions (pH 11.28 at 30°C in 9.5% ethanol-water), 2-acetylphenyl mesitoate [41]is hydrolysed 130 times more readily than 4-acetylphenyl mesitoate, clearly indicating intramolecular catalysis. However, the products of hydrolysis provided no clue to the mechanism of... 

According to the stepwise electrophilic reaction mechanism, the differences in the stereochemistries of the products from the reactions of alkenes with cyclic 49 and acyclic 51 disulfonium dications can be explained by the larger rates of the intramolecular reactions. In the case of a cyclic dication, the carbocationic center in intermediate 94, which is formed as the result of initial attack by a S-S dication on a double C=C bond reacts with nucleophile intramolecularly, thus conserving the configuration of the substituents at the double bond. On the other hand, an acyclic dication undergoes transformation to two separate particles (95 and dimethylsulfide) with a consequent loss of stereoselectivity. Additional experiments with deuteretad alkenes confirm that reaction is not stereoselective, lending further support to the stepwise mechanism (Scheme 36).106... 

Optically active sulfonium and selenonium salts are well known and the stereochemistry of the isomers has been studied.1 3 Optically active cyclic diaryl(alkoxy)-sulfonium salts 14, 15, and 16, stabilized by intramolecular sulfur-oxygen interaction, were synthesized in 2000 by reacting optically active spirosulfuranes with trimethyloxonium tetrafluoroborate.29 The absolute configurations were assigned on the basis of the reaction mechanism. The sulfonium salts were hydrolyzed in KHC03aq. to yield optically active sulfoxides in over 86% ee (Scheme 7). 

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