Hydride transfer catalysis

Novel Hydride Transfer Catalysis for Carbohydrate Conversions... 

Electrochemical and spectroscopic studies have demonstrated that Rh(III) complexes are more efficient than the Co(II) or Ir(III) partners for hydride transfer catalysis [427]. 

Figure 1.9 Examples of functionally important intrinsic metal atoms in proteins, (a) The di-iron center of the enzyme ribonucleotide reductase. Two iron atoms form a redox center that produces a free radical in a nearby tyrosine side chain. The iron atoms are bridged by a glutamic acid residue and a negatively charged oxygen atom called a p-oxo bridge. The coordination of the iron atoms is completed by histidine, aspartic acid, and glutamic acid side chains as well as water molecules, (b) The catalytically active zinc atom in the enzyme alcohol dehydrogenase. The zinc atom is coordinated to the protein by one histidine and two cysteine side chains. During catalysis zinc binds an alcohol molecule in a suitable position for hydride transfer to the coenzyme moiety, a nicotinamide, [(a) Adapted from P. Nordlund et al., Nature 345 593-598, 1990.)...

As shown in Figure 16.10, this reaction mechanism involves nucleophilic attack by —SH on the substrate glyceraldehyde-3-P to form a covalent acylcysteine (or hemithioaeetal) intermediate. Hydride transfer to NAD generates a thioester intermediate. Nucleophilic attack by phosphate yields the desired mixed carboxylic-phosphoric anhydride product, 1,3-bisphosphoglycerate. Several examples of covalent catalysis will be discussed in detail in later chapters. 

To better understand the catalytic mechanism of DHFR and to use this information for the design of potent DHFR-specific inhibitors, we evaluated the proton and hydride transfers using an integrated ab initio Quantum Mechanics/Molecular Mechanics (QM/MM) approach in combination with FEP technology. The combinatorial application of these methods enabled us to propose a precise path along which the proton and hydride ion are transferred and to address the key structural and energetic changes associated with catalysis. 

Hydride transfer from [(bipy)2(CO)RuH]+ occurs in the hydrogenation of acetone when the reaction is carried out in buffered aqueous solutions (Eq. (21)) [39]. The kinetics of the reaction showed that it was a first-order in [(bipy)2(CO)RuH]+ and also first-order in acetone. The reaction proceeds faster at lower pH. The proposed mechanism involved general acid catalysis, with a fast pre-equilibrium protonation of the ketone followed by hydride transfer from [(biPy)2(CO)RuH]+. 

The study of Karsten et al. (entry 13 in Table 2) is of special interest because the reaction under catalysis (see Figure 5 for the schematic mechanism) may involve hydride transfer simultaneous with the fission of a C-C bond in the decarboxylation component of the reaction. If the two events are concerted (evidence in related enzymes does not provide a clear guideline on this point) then tunneling might become more difficult because of the increased effective mass. 

The solvent isotope effect produces an A-ratio (HOH/DOD) of three with isotope-independent A// of 17-18 kJ/mol. This result is more difficult to interpret, because it is unknown how many isotopic sites in the enzyme or water structure contribute to the isotope effect of 2-3. If a single site should be the origin of the effect, then the site could reasonably be a solvent-derived protonic site of the enzyme involved in general-acid catalysis of the hydride transfer, most simply by protonic interaction with the carbonyl oxygen of cyclohexenone or possibly by proton transfer to an olefinic carbon of cyclohexenone. 

Moinuddin SGA, Youn B, Bedgar DL et al (2006) Secoisolariciresinol dehydrogenase mode of catalysis and stereospecificity of hydride transfer in Podophyllum peltatum. Org Biol Chem 4 808-816... 

Isotope effects have also been applied extensively to studies of NAD+/NADP+-linked dehydrogenases. We typically treat these enzymes as systems whose catalytic rates are limited by product release. Nonetheless, Palm clearly demonstrated a primary tritium kinetic isotope effect on lactate dehydrogenase catalysis, a finding that indicated that the hydride transfer step is rate-contributing. Plapp s laboratory later demonstrated that liver alcohol dehydrogenase has an intrinsic /ch//cd isotope effect of 5.2 with ethanol and an intrinsic /ch//cd isotope effect of 3-6-4.3 with benzyl alcohol. Moreover, Klin-man reported the following intrinsic isotope effects in the reduction of p-substituted benzaldehydes by yeast alcohol dehydrogenase kn/ko for p-Br-benzaldehyde = 3.5 kulki) for p-Cl-benzaldehyde = 3.3 kulk for p-H-benzaldehyde = 3.0 kulk for p-CHs-benzaldehyde = 5.4 and kn/ko for p-CHsO-benzaldehyde = 3.4. 

Reaction (64) demonstrates the production of a metal formyl complex by intermolecular hydride transfer from a metal hydride which is expected to be regenerable from H2 under catalytic conditions. Further, it provides a plausible model for the interaction of [HRu(CO)4] with Ru(CO)4I2 during catalysis, and suggests a possible role for the second equivalent of [HRu(CO)4]- which the kinetics indicate to be involved in the process (see Fig. 23). Since the Ru(CO)4 fragment which would remain after hydride transfer (perhaps reversible) from [HRu(CO)4] is eventually converted to [HRu3(CO)),] [as in (64)] by reaction with further [HRu(CO)4], the second [HRu(CO)4]- ion may be involved in a kinetically significant trapping reaction. 

Craq002+ also acts as a catalyst for oxidations with O2 in the presence of HNO2. Radical coupling, this time with NO, is again an essential mechanistic step. The catalysis takes advantage of the demonstrated preference for an intermediate, Craq02 +, to react in two-electron, hydride-transfer steps with organic materials. Reactivity studies of potential intermediates in other systems may uncover new catalytic powers of LMOO species. 

Thus, dichloro- or dibromomethane in the presence of sodium hydride in solution in N,N-dimethylformamide gives O-methylene derivatives [73,74], Other conditions are also possible, for instance use of potassium hydroxide and dimfethylsulfoxyde [75], but an interesting development is the application of the phase-transfer catalysis technique, by which dibromomethane and sodium hydroxide in water, in the presence of an appropriate ammonium salt, leads to a cis-23-O-methylenation of methyl-4,6-O-benzylidene-a-D-mannopyranoside, [76] and simitar conditions afford the Other examples have been published [78]. 

A key structural and mechanistic feature of lactate and malate dehydrogenases is the active site loop, residues 98-110 of the lactate enzyme, which was seen in the crystal structure to close over the reagents in the ternary complex.49,50 The loop has two functions it carries Arg-109, which helps to stabilize the transition state during hydride transfer and contacts around 101-103 are the main determinants of specificity. Tryptophan residues were placed in various parts of lactate dehydrogenase to monitor conformational changes during catalysis.54,59,60 Loop closure is the slowest of the motions. 

As shown in Eqs. (17) and (18), the isolated formyls 19 and 24 are capable of reducing aldehydes and ketones (37, 38, 42. 47, 66). Thus there is no doubt that hydride transfer is an intrinsic chemical property of anionic formyl complexes. One reaction of a neutral formyl complex with an aldehyde has been reported addition of benzaldehyde to (i7-C5H5)Re(NO)(CO)(CHO) (38) yields the alkoxycarbonyl complex (i7-C5H5)Re(NO)(CO)(C02CH2C6Hs) (62). This transformation, which appears to require catalysis by adventitious acid, can be viewed as occurring via attack of initially formed benzyl alcohol upon the intermediate carbonyl cation [(i -C5H5)Re(NO)(CO)2]+. 

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