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Flux-based simulation

Molecular dynamics simulations of ionic motion in hydrated ion channels have been performed for more than two decades. Much work [Pg.273]

It should be clear by now that a microscopic representation of the system components can provide invaluable information for the molecular modeler that relates the structure of ion channels to their function. A major problem with such microscopic, atomistic, particle-based approaches is the inability [Pg.273]

It is our opinion (and probably the most important message that we try to convey in this chapter) that any approach for simulating complex, many-body systems must be based on a hierarchy of consistently related models (see the next section). Each model employed must be validated individually [Pg.273]


Although not rigorously correct, the approximation of water as a structureless homogeneous continuum dielectric medium is used by many simulative methodologies. Both Brownian dynamics (see the section entitled Implicit Solvation Brownian Dynamics) and electrodiffusive approaches (see the section on Flux-Based Simulation) include the water in the electrostatic picture as a continuous dielectric background with polarizability appropriately tuned... [Pg.239]

The remainder of this section is devoted to the derivation of Eq.[54]. Besides the mathematics we also define the range of applicability of simulations based on the Nernst-Planck equation. The starting point for deriving the Nernst-Planck equation is Langevin s equation (Eq. [45]). A solution of this stochastic differential equation can be obtained by finding the probability that the solution in phase space is r, v at time t, starting from an initial condition ro, Vo at time = 0. This probability is described by the probability density function p r, v, t). The basic idea is to find the phase-space probability density function that is a solution to the appropriate partial differential equation, rather than to track the individual Brownian trajectories in phase space. This last point is important, because it defines the difference between particle-based and flux-based simulation strategies. [Pg.275]

Model simulations of particle volume concentrations in the summer as functions of the particle production flux in the epilimnion of Lake Zurich, adapted from Weilenmann, O Melia and Stumm (1989). Predictions are made for the epilimnion (A) and the hypolimnion (B). Simulations are made for input particle size distributions ranging from 0.3 to 30 pm described by a power law with an exponent of p. For p = 3, the particle size distribution of inputs peaks at the largest size, i.e., 30 pm. For p = 4, an equal mass or volume input of particles is in every logaritmic size interval. Two particle or aggregate densities (pp) are considered, and a colloidal stability factor (a) of 0.1 us used. The broken line in (A) denotes predicted particle concentrations in the epilimnion when particles are removed from the lake only in the river outflow. Shaded areas show input fluxes based on the collections of total suspendet solids in sediment traps and the composition of the collected solids. [Pg.274]

Equations (8.1)-(8.13) can be solved to provide transient- or steady-state profiles of O2 and CH4 concentration, reaction rates and surface fluxes for any combination of the controlling variables 9q,0], v,k, a, Vm,Vq and Vr. Where, as is usual, one or more of the controlling variables may be further simplified, approximated or neglected, process-based simulation of CH4 emission becomes possible using a relatively limited set of input data. [Pg.240]

Figure 7.6 Hybrid dyiiamic/static simulation algorithm. Using flux-based methods, the algorithm allows dynamic models to be integrated with stoichiometry-based models. Figure 7.6 Hybrid dyiiamic/static simulation algorithm. Using flux-based methods, the algorithm allows dynamic models to be integrated with stoichiometry-based models.
Outlook to application ofMGD in natural gas processing The flux data of Figure 6 were used to estimate the membrane area that is needed to regenerate the solvent from a natural gas treating plant Aspen rate based simulations were used to derive a typical MDEA flow and rich and lean loadings as well as water evaporation in case of conventional stripper... [Pg.240]

Equations [18], [54], and [55] constitute a system of three equations with three unknowns, and this system is solved numerically on one-, two-or three-dimensional domains. For the sake of simplicity, we will discuss the one-dimensional case (the equations are easily extended to three-dimensional). Although finite element methods have been used extensively for the solution of Eqs. [18], and [55] in solid state electronics, flux-based approaches for the simulation of ion channels rely primarily on finite difference schemes. [Pg.278]

Abstract. 256x256-dement IBC Si As arrays have been evaluated for applications in IR astronomy firom space-borne platforms. Basic figures of merit were measured at IR flux levels simulating those expected in space-based astronomical observations. Results indude dark current < 20e /s, Gri as high as 3.8, rijp of 20%, and read noise bdow 100 rms e. ... [Pg.327]

However, under more realistic test conditions Hancock and Islam showed that in burner rig tests with contaminant flux rates greater than about 0-1 mgcm h" the corrosion rate of nickel- and cobalt-base superalloys was largely independent of alloy composition in the temperature range 7(X)-850 C. However, in burner rig tests at 6(X) C, simulating diesel engine combustion, Saunders et reported that Nimonic 80A (20% Cr) had superior resistance to Stellite 6 (Co-28%Cr) and EN 52 (Fe-8%Cr-3%Si). [Pg.1071]

A continuous cross-flow filtration process has been utilized to investigate the effectiveness in the separation of nano sized (3-5 nm) iron-based catalyst particles from simulated Fischer-Tropsch (FT) catalyst/wax slurry in a pilot-scale slurry bubble column reactor (SBCR). A prototype stainless steel cross-flow filtration module (nominal pore opening of 0.1 pm) was used. A series of cross-flow filtration experiments were initiated to study the effect of mono-olefins and aliphatic alcohol on the filtration flux and membrane performance. 1-hexadecene and 1-dodecanol were doped into activated iron catalyst slurry (with Polywax 500 and 655 as simulated FT wax) to evaluate the effect of their presence on filtration performance. The 1-hexadecene concentrations were varied from 5 to 25 wt% and 1-dodecanol concentrations were varied from 6 to 17 wt% to simulate a range of FT reactor slurries reported in literature. The addition of 1-dodecanol was found to decrease the permeation rate, while the addition of 1-hexadecene was found to have an insignificant or no effect on the permeation rate. [Pg.270]

For our simulations with heat sinks in spheres, we chose not to stack runs, in order to minimize the change in temperature across the WS, and instead carried out a study of the effects of simplified boundary conditions. For most runs, simple boundary conditions were used in which the fluid entering at the base of the segment was set uniformly to Tin, and fluxes through the solid areas on the top and bottom planes were set to zero. No thermal boundary condition was required for the flow outlet boundary. [Pg.375]


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See also in sourсe #XX -- [ Pg.239 , Pg.273 ]




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