Flavine adenine dinucleotide binding site

Complex II contains four peptides, the two largest form succinate dehydrogenase, the largest has covalently boiuid flavin adenine dinucleotide (FAD) which reacts with succinate, and the other has three iron-sulphur centers. Smaller subunits anchor the two larger subunits to the membrane and form the UQ binding site. Ubiquinone is the electron acceptor but complex II does not pump protons (see below). 

Monoamine oxidase (MAO) (E.C. 1.4.3.4) is an enzyme found in all tissues and almost all cells, bound to the outer mitochondrial membrane. Its active site contains flavine adenine dinucleotide (FAD), which is bound to the cysteine of a -Ser-Gly-Gly-Cys-Tyr sequence. Ser and Tyr in this sequence suggest a nucleophilic environment, and histidine is necessary for the activity of the enzyme. Thiol reagents inhibit MAO. There are at least two classes of MAO binding sites, either on the same molecule or on different isozymes. They are designated as MAO-A, which is specific for 5-HT (serotonin) as a substrate, and MAO-B, which prefers phenylethylamine. Similarly, MAO inhibitors show a preference for one or the other active site, as discussed below. 

The C-terminal portion of the NOS protein closely resembles to cytochrome P-450 reductase, possesses many of the same cofactor binding sites, and basically performs the same functions. Consequently, this portion is often referred to as the reductase domain. At the extreme C-terminus is an NADPH binding region, which is conserved in all NOS and aligns perfectly with that of cytochrome P-450 reductase. The NADPH binding site is followed, in turn, by flavin adenine dinucleotide (FAD) and flavin mononucleotide (FMN) consensus sequences. 

Some proteins contain other native fluorophores in addition to fluorescent amino acids. These include cofactors such as nicotinamide adenine dinucleotide (fluorescent in its reduced, NADH state) and flavin adenine dinucleotide (FAD). NADH is weakly fluorescent in water, but its fluorescence yield increases markedly on binding to a protein-binding site with an emission peak around 470 nm (3). FAD and flavin mononucleotide (FMN) are also fluorescent with an emission maximum around 520 nm, but fluorescence is quenched on binding to many flavoproteins (4). 

The transient absorption spectra similar to that of the ion-pair state of indole cation radical and flavin anion radical were also observed in D-amino acid oxidase (5), although the spectra were not so clear as those of flavodoxin. In D-amino acid oxidase, the coenzyme, flavin adenine dinucleotide (FAD), is wealtly fluorescent. The fluorescence lifetime was reported to be 40 ps (16), which became drastically shorter (less than 5 ps) when benzoate, a competitive inhibitor, was combined with the enzyme at FAD binding site (17). The dissociation constant of FAD was also marlcedly decreased by the binding of benzoate (17). These results suggest that interaction between isoalloxazine and the quencher became stronger as the inhibitor combined with the enzyme. Absorbance of the transient spectra of D-amino acid oxidase-benzoate complex was remarkably decreased. In this case both rate constants of formation and decay of the CT state could become much faster than those in the case of D-amino acid oxidase free from benzoate. 

The NOSs are best characterized as cytochrome P-450-like hemeprot-eins (Bredt et al., 1991 Stuehr and Ikeda, 1992 White and Marietta, 1992). They can be broadly divided into a reductase domain at the COOH terminus and an oxidative domain at the NH2 terminus (Fig. 1). The primary amino acid sequences of NOS isoforms share common consensus sequence binding sites for calmodulin, NADPH, flavin-adenine dinucleotide (FAD), and flavin mononucleotide (FMN) (Bredt et al., 1991 Marsden et al., 1992 Sessa et al., 1992 Xie et al., 1992 Lyons et al., 1992 Lowenstein et al., 1992). Each enzyme functions as a dimeric protein in catalyzing the NADPH-dependent five-electron oxidation of L-arginine to generate NO. L-Citrulline is a by-product (Back et al., 1993 Abu and Stuehr, 1993). Electrons are supplied by NADPH, transferred along the flavins and calmodulin, and presented to the catalytic heme center (Stuehr and Ikeda, 1992 White and Marietta, 1992). The NOS apoenzyme requires tetrahydrobiopterin, prosthetic heme (ferroprotoporphyrin IX), calmodulin, FMN, and FAD as cofactors for monomer assembly and/or catalytic activity (Abu and Stuehr, 1993 Mayer and Werner, 1994 Kwon etal., 1989 Stuehr and Ikeda, 1992 Stuehr and Griffith, 1992 White and Marietta, 1992 McMillan etal., 1992 Klatt... 

FIGURE I Schematic alignment of the deduced amino acid sequences of nitric oxide synthases (NOSs) and the cytochrome P-450 reductase. Depicted are consensus binding sites for heme, L-arginine, calmodulin (CaM), flavin mononucleotide (FMN), flavin-adenine dinucleotide (FAD), and NADPH. An NH2-terminal myristoylation site (myr) is present only in the endothelial constitutive NOS (ecNOS). n. Neuronal i, inducible. 

As for reduction processes, C02 free radicals were shown to react specifically with disulfide bonds (122). They were extensively used to study the redox properties of disulfide bonds, thiyl and disulfide free radicals in proteins. This is discussed in paragraph 5. However, they do react with thiol functions also (37). For proteins containing a prosthetic group, the reduction concerns also oxidized valencies of metals and flavins. Flavin adenine dinucleotide (FAD) or Flavin Mononucleotide (FMN). The proportion of reduced disulfide/reduced prosthetic group varies considerably with the protein. For instance, lipoamide dehydrogenase contains one disulfide bond close to a flavin (FAD). Free radicals can reduce only the flavin, although both are in the active site (123). In chicken egg white riboflavin binding protein, competitive formation of both disulfide and semireduced flavin is observed (124). 

A cDNA clone of the flavoprotein (/ )-(+ )-mandeloni-trile lyase from Prunus serotina has been made and a putative Flavin Adenine Dinucleotide (FAD)-binding site was identified (Cheng and Poulton, 1993). 

Catalysis by flavoenzymes has been reviewed and various analogues of FAD have been prepared e.g. P -adenosine-P -riboflavin triphosphate and flavin-nicotinamide dinucleotide ) which show little enzymic activity. The kinetic constants of the interaction between nicotinamide-4-methyl-5-acetylimidazole dinucleotide (39) and lactic dehydrogenase suggest the presence of an anionic group near the adenine residue at the coenzyme binding site of the enzyme. ... 

In 1989, BH4 was found to be a cofactor for nitric oxide synthase (NOS) [ 126, 127]. BH4 is also involved in dimerization of NOS, as NOS is catalytically active in a homodimer structure. Three isoforms of NOS exist neuronal NOS (NOS 1), inducible NOS (NOS 2) and endothelial NOS (NOS 3). BH4 is essential for all NOS isoforms. The NOS isoforms share approximately 50-60% sequence homology. Each NOS polypeptide is comprised of oxygenase and reductase domains. An N-terminal oxygenase domain contains iron protoporphyrin IX (heme), BH4 and an arginine binding site, and a C-terminal reductase domain contains flavin mononucleotide (FMN), and a reduced nicotin-amide adenine dinucleotide phosphate (NADPH) binding site. 

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