Hydrolytic enzymes specificity

Thus the use and practice of biocatalysis at full scale has waxed and waned over the years. In the past, one factor limiting the use of biocatalysis has been the availability of a variety of enzymes and the time taken to refine/evolve enzymes for specific industrial apphcations. Hydrolytic enzymes such as lipases and proteases designed for other industrial uses such as detergents and food processing have always been available in bulk, and indeed used by process chemists. 

The properties of the enzymes used in this study have been described in former publications (10,11,15). Important for the following interpretation are their hydrolytic specificities. The xylanase did not hydrolyze either isolated mannans or celluloses—or only to a very small extent (10). The same is true for the mannanase with respect to xylans and celluloses (11,15). The avicelases, which were not purified to the same extent as the xylanase and mannanase, did not hydrolyze mannans, but they degraded xylans besides crystalline cellulose (10). Also, the highly purified cellobiohydrolase C (12) degraded xylan to some extent (Dr. E. K. Gum, Jr., personal communication). 

The conversion of histidinol phosphate to histidine requires removal of the phosphate group free histidinol was the first precursor of histidine established in genetic studies. The hydrolysis of histidinol phosphate is catalyzed by a phosphatase that has recently been purified by Ames from Neurospora extracts. This enzyme is active with histidinol phosphate as a substrate, but has very little, if any, activity with a number of phosphate esters, including the other imidazole compounds involved in histidine biosynthesis. At least one less specific phosphatase occurs in Neurospora histidinol phosphate is also hydrolyzed nonspecifically, but the activity of the nonspecific hydrolytic enzyme is slow compared with the specific histidinol phosphatase. The nonspecific reaction may account for the slow growth of mutants deficient in the specific enzyme. The specific enzyme is quite insensitive to beryllium and chelating agents, which inhibit nonspecific phosphate hydrolysis. 

Hydrolytic enzymes, characterized by high specificity and high catalytic reactivity have been the most frequently modeled biopolymers At the active site of the enzyme there are usually several functional groups responsible for the overall catalytic reaction which are covalently bound to remote areas of the enzyme. Collectively these interactions, which are termed as intramolecular multiple catalyst reactions are closely related to an enzyme s specificity and efficiency. 

Type II restriction enzymes have received widespread application in the cloning and sequencing of DNA molecules. Their hydrolytic activity is not ATP-depen-dent, and they do not modify DNA by methylation or other means. Most importantly, they cut DNA within or near particular nucleotide sequences that they specifically recognize. These recognition sequences are typically four or six nucleotides in length and have a twofold axis of symmetry. For example, E. coU has a restriction enzyme, coRI, that recognizes the hexanucleotide sequence GAATTC ... 

The specificity of enzyme reactions can be altered by varying the solvent system. For example, the addition of water-miscible organic co-solvents may improve the selectivity of hydrolase enzymes. Medium engineering is also important for synthetic reactions performed in pure organic solvents. In such cases, the selectivity of the reaction may depend on the organic solvent used. In non-aqueous solvents, hydrolytic enzymes catalyse the reverse reaction, ie the synthesis of esters and amides. The problem here is the low activity (catalytic power) of many hydrolases in organic solvents, and the unpredictable effects of the amount of water and type of solvent on the rate and selectivity. 

Furthermore, the GPO procedure can also be used for a preparative synthesis of the corresponding phosphorothioate (37), phosphoramidate (38), and methylene phosphonate (39) analogs of (25) (Figure 10.20) from suitable diol precursors [106] to be used as aldolase substrates [102]. In fact, such isosteric replacements of the phosphate ester oxygen were found to be tolerable by a number of class I and class II aldolases, and only some specific enzymes failed to accept the less polar phosphonate (39) [107]. Thus, sugar phosphonates (e.g. (71)/(72)) that mimic metabolic intermediates but are hydrolytically stable to phosphatase degradation can be rapidly synthesized (Figure 10.28). 

These enzymes catalyse the non-hydrolytic cleavage of bonds in a substrate to remove specific functional groups. Examples include decarboxylases, which remove carboxylic acid groups as carbon dioxide, dehydrases, which remove water, and aldolases. The decarboxylation of pyruvic acid (10.60) to form acetaldehyde (10.61) takes place in the presence of pyruvic decarboxylase (Scheme 10.13), which requires the presence of thiamine pyrophosphate and magnesium ions for activity. 

---