Enzyme reactions proton inhibitors/activators

Strong evidence for this assumption has been provided by Sachs and coworkers [58,66,78,87]. They found that the rate of proton uptake depends on the nature of the cation present and that the sequence of the stimulating effect of these cations is the same as for the ATPase reaction. The only exception is T1, which strongly stimulates the ATPase but inhibits proton transport [71]. The substrate specificity for the proton transport is also the same as for the (K +H" )-ATPase activity. Most inhibitors of the enzyme reaction, described in Section 3g, also inhibit the proton transport process. 

Biocatalytk decarboxylation is a imique reaction, in the sense that it can be considered to be a protonation reaction to a carbanion equivalent intermediate in aqueous medimn. Thus, if optically active compoimds can be prepared via this type of reaction, it would be a very characteristic biotransformation, as compared to ordinary organic reactions. An enzyme isolated from a specific strain of Alcaligenes bronchisepticus catalyzes the asymmetric decarboxylation of a-aryl-a-methyhnalonic acid to give optically active a-arylpropionic acids. The effect of additives revealed that this enzyme requires no biotin, no co-enzyme A, and no ATP, as ordinary decarboxylases and transcarboxylases do. Studies on inhibitors of this enzyme and spectroscopic analysis made it clear that the Cys residue plays an essential role in the present reaction. The imique reaction mechanism based on these results and kinetic data in its support are presented. 

The presence of fluorine strongly destabihzes a carbocation centered on the jS carbon because only the inductive effect takes place. " The effect on solvolysis or protonation reaction of double bonds can be very important. The destabilization of carbenium and alkoxycarbenium ions plays an importantrole in the design of enzyme inhibitors (cf Chapter 7) and in the hydrolytic metabolism of active molecules (cf. Chapter 3). 

Despite all the problems inherent to QM/CM approaches, some extremely interesting and perceptive work has been described in the literature recently in which all sorts of approaches have been used, improvements introduced and results obtained ([351, 372] and references therein). The study of enzyme catalysed reaction mechanisms, the calculation of relative binding free energies of substrates and inhibitor, and the determination of proton transfer processes in enzymatic reactions, are all good examples of enzyme-ligand interactions studies. Even though Warshel s EVB method [349] probably remains the most practical QM/CM approach for the study of enzyme catalysis, very useful work has been reported on enzyme catalysed reactions ([381] for an excellent review-[238, 319, 382-384]). This is a consequence of the accuracy of QM to treat the active site and inhibitor/substrate and the viability of classical mechanics to model the bulk of the enzyme not directly involved in the chemical reaction. 

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