Draft genome

Carlton JM et al. (2007) Draft genome sequence of the sexually transmitted pathogen Trichomonas vaginalis. Science 315 207-212... 

Discussion of the draft genome sequence put together by the international Human Genome Project. Many other useful articles are to be found in this issue. 

Dehal P, Satou Y, Campbell RK, et al (2002) The draft genome of Ciona intestinalis insights into chordate and vertebrate origins. Science 298 2157-2167... 

Figure 2. The filamentous YpfPhi prophage in Yersinia pestis C092. Two DNA fragments of the Yersinia enterocolitica 0 3 draft genome sequence demonstrate >99% identity to Y. pestis YpfPhi prophage (identical genes are marked with +).

Because all predicted genes receive unique database identifiers, which can be used, e.g., in your assembly tool, you can go through several annotation rounds following the progress of the draft genomic sequence without loosing previous information. 

Running Mercator is simple and fast once all of the input files have been generated. Because the D. ananassae assembly is still in scaffolds, we will tell Mercator that it should be treated as a draft genome by using the -d flag. 

The second paper (Lander et al., 2001 also referred to as International Human Genome Sequencing Consortium, 2001) studied the draft genome sequence to see whether strict isochores could be identified and failed to find any. They concluded that their results rule out a strict notion of isochores as compositionally homogeneous and that isochores do not appear to deserve the prefix iso . ... 

Dehal, R, Satou, Y., Campbell, R. K., et al.. The draft genome of Ciona intestirudis insight into chor-date and vertebrate origins. Science (2002), pp. 2157-2167. 

J. (2012) Draft genome sequence of butanol-acetone- producing Clostridium beijerinckii strain G117. f. Bacterial, 194, 5470-5471. 

Miiller, S., Willett, J.W, Bahr, S.M., Darnell, C.L. et al. (2013) Draft genome sequence of Myxococcus xanthus wild-type strain DZ2, a model organism for predation and development. Genome Announc., 1 (3), e00217-13. 

H. et al. (2013) Genomic landscapes of Chinese hamster ovary cell lines as revealed by the Cricetulus griseus draft genome. Nat. Biotechnol, 31, 7S9-7(>S. 

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