1,3-dipolar cycloaddition reactions Diels—Alder reaction

Scheme 4 Access to various a,/ -unsaturated carbene complexes from alkynylcarbene complexes 23. A 1,3-Dipolar cycloaddition. B Diels-Alder reaction. C Ene reaction. D [2+2] Cycloaddition. E Michael-type addition followed by cyclization. F Michael-type additions...

Perhaps the most successful application of Fukui function and local softness is in the elucidation of the region-selective behavior of different types of pericyclic reactions including the 1,3-dipolar cycloadditions (13DC), Diels-Alder reactions, etc. These reactions can be represented as shown in Scheme 12.4. Considering the concerted approach of the two reactants A and B, there are two possible modes of addition as shown in Pathway-I and Pathway-II. 

An important catalyst-substrate intermediate that applies to both the TiCl2-TADDOLate catalyzed 1,3-dipolar cycloadditions and Diels-Alder reactions has been isolated and characterized (353). The crystalline compound 248 has been characterized by X-ray analysis, showing that the oxazolidinone is coordinated to the titanium center in a bidentate fashion (Scheme 12.75). The four oxygen atoms. 

Three reactions are of great importance [2 + 2] cycloaddition, 1,3-dipolar cycloaddition and Diels-Alder reactions ([4 + 2] cycloadditions), which lead to four-, five- and six-membered rings, respectively. [3 + 3] Cycloadditions are known (see Section 4.3.8.2) but are of less importance. 

Pyrazol-3-one derivatives have taken part in both 1,3-dipolar cycloaddition and Diels-Alder reactions. The 1,3-dipolar cycloaddition between (Z)-pyrazol-3-ones 694a g with an excess of ethyl vinyl ether gave the pyrazol-3-one-4-spiro-3-isoxazolidines 695a-g, in nearly quantitative yield (82G483) (Scheme 203). The kinetics of this reaction was studied by quantitative spectroscopic analysis. The rate of reaction increases with the electron-withdrawing character of the substituent on the aromatic ring and a linear relationship is obtained between logk and op constants. The LUMO nitrone-HOMO vinyl ether is taken as the dominant interaction. 

FMO theory [67] was successfully applied to the rationalization of electrophilic, nucleophilic, and ambiphilic behavior in 1,3-dipolar cycloaddition and Diels-Alder reactions. [68] The availability of orbital energies computed for a variety of CXY, [69] enables a similar rationalization of carbenic reactivity and philicity. It was from my colleagues Ken Houk (then of Louisiana State University, now of UCLA) and Karsten Krogh-Jespersen (of Rutgers University) that 1 learned how incisively FMO theory could help us to understand carbenic philicity. My collaborations with each of these excellent scientists have greatly enriched my understanding of carbenic reactivity. 

Nucleophilic addition, 1,3-dipolar cycloaddition, and Diels-Alder reactions of indoles substituted at the 2- or 3-position with electron-withdrawing groups (NO2, PhS02) 05COC1493. 

In the following sections, we introduce two types of chemical reactions that gained special attention in the field of bioorthogonal chemistry the 1,3-dipolar cycloadditions and Diels-Alder reactions. 

The vast potential of 1,3-dipolar cycloadditions and Diels-Alder reactions in synthetic organic chemistry has been exploited by organic chemists for decades. However, it was only recently that the power of these chemical transformations attracted chemical biologists who recognized the beauty and immense possibilities of the chemistry for applications on biomolecules. The inherent features of these reactions, which include fast kinetics, high yields and excellent biocompatibility, make them perfectly suited to tag and study biomolecules in their native environment. 

The following book chapters aim to recapitulate the recent advances in bioorthogonal reactions, with a focus on 1,3-dipolar cycloadditions and Diels-Alder reactions that were particularly influential in the field. Besides cycloaddition reactions, there are other types of chemical reactions that are selective and orthogonal to natural systems and were successfully used for various applications in chemical biology. We refer readers with broader interest on the topic to excellent reviews, published recently [97-100]. 

Electrocyclic reactions Diels-Alder reactions Hetero-Diels-Alder reactions 1,3-Dipolar cycloadditions... 

When cyclic product, the reaction is called a cycloaddition. The reverse reaction is called a retro-cycloaddition. Cycloadditions are further classified as [m + n] according to the number of atoms in each component. Again, it is important to note not only the number of atoms but also the number of electrons involved in the process. You are already familiar with the six-electron [4 + 2] cycloaddition, the Diels Alder reaction. Four-electron [2 + 2] cycloadditions are less common, for reasons that will be discussed, but ketenes undergo them readily. The [3 + 2] cycloadditions (or 1,3-dipolar cycloadditions) are a very important class of six-electron cycloadditions that are used to make a wide variety of five-membered heterocycles. Other cycloadditions, including [8 + 2], [4 + 3], and [6 + 4] cycloadditions, are also known. 

Resin-bound nitroalkenes were synthesized via a Knoevenagel condensation of resin-bound nitro acetic acid with aryl and alkyl substituted aldehyde (Scheme 9.29). In this way an extra site of diversity can be introduced into the cycloaddition products of these nitroalkenes. Furthermore, the resin-bound nitroalkenes can serve as activated alkenes in other cycloaddition reactions (Diels-Alder, 1,3-dipolar cycloaddition, [2 + 2] cycloaddition) and therefore lead to the solid phase synthesis of other interesting compoimd classes (see also Scheme 9.3, Sect. 9.2). Formation of the resin-bound nitroalkenes 73a-e was realized in one step via a microwave-assisted condensation of aldehyde 72a-e (10 equiv.) with the resin-bound nitro acetic acid 71, followed by dehydration of the intermediate y -nitroalcohol [6] (Scheme 9.29). THF was used as the solvent in order to obtain optimal diffusion of the aldehyde in the polystyrene resin. 

Apart from the thoroughly studied aqueous Diels-Alder reaction, a limited number of other transformations have been reported to benefit considerably from the use of water. These include the aldol condensation , the benzoin condensation , the Baylis-Hillman reaction (tertiary-amine catalysed coupling of aldehydes with acrylic acid derivatives) and pericyclic reactions like the 1,3-dipolar cycloaddition and the Qaisen rearrangement (see below). These reactions have one thing in common a negative volume of activation. This observation has tempted many authors to propose hydrophobic effects as primary cause of ftie observed rate enhancements. 

Mechanistic investigations have focused on the two pericyclic reactions, probably as a consequence of the close mechanistic relation to the so successful aqueous Diels-Alder reaction. A kinetic inquest into the effect of water on several 1,3-dipolar cycloadditions has been performed by Steiner , van... 

The distinction between these two classes of reactions is semantic for the five-membered rings Diels-Alder reaction at the F/B positions in (269) (four atom fragment) is equivalent to 1,3-dipolar cycloaddition in (270) across the three-atom fragment, both providing the 47t-electron component of the cycloaddition. Oxazoles and isoxazoles and their polyaza analogues show reduced aromatic character and will undergo many cycloadditions, whereas fully nitrogenous azoles such as pyrazoles and imidazoles do not, except in certain isolated cases. 

Just as in the Diels-Alder reaction, 1,4-dipolar cycloadditions lead to six-membered rings. Their principal use in five-membered heterocycles is for ring annulations giving [5,6] ring-fused systems. 

There is a large elass of reactions known as 1,3-dipolar cycloaddition reactions that are analogous to the Diels-Alder reaction in that they are coneerted [4jc -I- 2jc] eyeloaddi-tions. ° These reactions can be represented as in the following diagram. The entity a—b—c is called the 1,3-dipolar molecule and d—e is the dipolarophile. 

The stereochemistry of the 1,3-dipolar cycloaddition reaction is analogous to that of the Diels-Alder reaction and is a stereospecific syn addition. Diazomethane, for example, adds stereospecifically to the diesters 43 and 44 to yield the pyrazolines 45 and 46, respectively. 

Fluoroallene also undergoes reaction exclusively at the C(2)-C(3) it bond and exhibits a slight syn selectivity in its Diels-Alder reactions [25, 26, 93] (equation 80), much less than that observed in its 1,3-dipolar cycloadditions... 

In the 1,3-dipolar cycloaddition reactions of especially allyl anion type 1,3-dipoles with alkenes the formation of diastereomers has to be considered. In reactions of nitrones with a terminal alkene the nitrone can approach the alkene in an endo or an exo fashion giving rise to two different diastereomers. The nomenclature endo and exo is well known from the Diels-Alder reaction [3]. The endo isomer arises from the reaction in which the nitrogen atom of the dipole points in the same direction as the substituent of the alkene as outlined in Scheme 6.7. However, compared with the Diels-Alder reaction in which the endo transition state is stabilized by secondary 7t-orbital interactions, the actual interaction of the N-nitrone p -orbital with a vicinal p -orbital on the alkene, and thus the stabilization, is small [25]. The endojexo selectivity in the 1,3-dipolar cycloaddition reaction is therefore primarily controlled by the structure of the substrates or by a catalyst. 

Scheeren et al. reported the first enantioselective metal-catalyzed 1,3-dipolar cycloaddition reaction of nitrones with alkenes in 1994 [26]. Their approach involved C,N-diphenylnitrone la and ketene acetals 2, in the presence of the amino acid-derived oxazaborolidinones 3 as the catalyst (Scheme 6.8). This type of boron catalyst has been used successfully for asymmetric Diels-Alder reactions [27, 28]. In this reaction the nitrone is activated, according to the inverse electron-demand, for a 1,3-dipolar cycloaddition with the electron-rich alkene. The reaction is thus controlled by the LUMO inone-HOMOaikene interaction. They found that coordination of the nitrone to the boron Lewis acid strongly accelerated the 1,3-dipolar cycloaddition reaction with ketene acetals. The reactions of la with 2a,b, catalyzed by 20 mol% of oxazaborolidinones such as 3a,b were carried out at -78 °C. In some reactions fair enantioselectivities were induced by the catalysts, thus, 4a was obtained with an optical purity of 74% ee, however, in a low yield. The reaction involving 2b gave the C-3, C-4-cis isomer 4b as the only diastereomer of the product with 62% ee. 

The theoretical investigations of Lewis acid-catalyzed 1,3-dipolar cycloaddition reactions are also very limited and only papers dealing with cycloaddition reactions of nitrones with alkenes have been investigated. The Influence of the Lewis acid catalyst on these reactions are very similar to what has been calculated for the carbo- and hetero-Diels-Alder reactions. The FMOs are perturbed by the coordination of the substrate to the Lewis acid giving a more favorable reaction with a lower transition-state energy. Furthermore, a more asynchronous transition-structure for the cycloaddition step, compared to the uncatalyzed reaction, has also been found for this class of reactions. 

Huisgen has reported in 1963 about a systematic treatment of the 1,3-dipolar cycloaddition reaction as a general principle for the construction of five-membered heterocycles. This reaction is the addition of a 1,3-dipolar species 1 to a multiple bond, e. g. a double bond 2 the resulting product is a heterocyclic compound 3. The 1,3-dipolar species can consist of carbon, nitrogen and oxygen atoms (seldom sulfur) in various combinations, and has four non-dienic r-electrons. The 1,3-dipolar cycloaddition is thus An +2n cycloaddition reaction, as is the Diels-Alder reaction. 

Mechanistically the 1,3-dipolar cycloaddition reaction very likely is a concerted one-step process via a cyclic transition state. The transition state is less symmetric and more polar as for a Diels-Alder reaction however the symmetry of the frontier orbitals is similar. In order to describe the bonding of the 1,3-dipolar compound, e.g. diazomethane 4, several Lewis structures can be drawn that are resonance structures ... 

Keywords Diels-Alder reactions, dipolar cycloadditions, electrocyclic reactions, ene reactions, pericyclic reactions, sigmatropic rearrangements... 

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