Depsipeptide

Macrocyclic peptides and depsipeptides ( macrocyciic peptides with amide and ester linkages) are important natural compounds. They have been synthesized in low yield from open-chain precursors by DCC treatment at high dilution (E. SchrSder, 1963 M.M. Shemyakin,... 

However, the term cycHc depsipeptide is often used ia the Hterature to refer to heterodetic homomeric peptide lactones ia which ester bonds to amino acid hydroxyls are present ia the ring. 

FIGURE 10.39 Structures of several ioiiophore antibiotics. Valinotnycin consists of three repeats of a four-unit sequence. Because it contains both peptide and ester bonds, it is referred to as a depsipeptide. 

In contrast, jasplakinolide, a cyclodepsipeptide from the marine sponge Jaspis johnstoni, rapidly penetrates the cell membrane. It competes with phalloidin for F-actin binding and has a dissociation constant of approximately 15 nM. It induces actin polymerization and stabilizes pre-existing actin filaments. Dolastatin 11, a depsipeptide from the mollusk Dolabella auricu-laria, induces F-actin polymerization. Its binding site differs from that of phalloidin or jasplakinolide. 

The utility of RCM methodology for the synthesis of open-chain building blocks from a,fi-unsaturated d-lactones is exemplified by the partial syntheses of Cossy aimed for (+)-methynolide (the aglycon of the methymicin family of macrolide antibiotics) [45], and the anticancer agent discodermolide [46], as well as during a recent total synthesis of the highly cytotoxic marine natural depsipeptide apratoxin A by Forsyth and Chen [47]. 

Application of the bromine substitution reaction allows the synthesis of aminoamides, alkoxyamides of simple alcohols and sugars, depsipeptides and (NH) pseudopeptides, C2 symmetric compounds. 

Further, Wasserman and coworkers developed a direct acylation of stabilized phosphonium ylides by carboxylic acids in presence of the EDCI/DMAP (way c). This last method allows the introduction of a-aminoacid structures into the resulting P-oxo phosphorus ylides [19-25],opening the way to the total synthesis of depsipeptide elastase inhibitors [22,24] or cyclic peptidic protease inhibitor EurystatinA [20]. 

Studies to elucidate the mode of bacteriostatic property of xanthostatin (XS), a novel depsipeptide antibiotic with an A/-acetylglydne side chain and selective antimicrobial activity against Xanthomonas spp., were carried ont by Kim and coworkers [80]. Two biotransformed XSs were isolated by the treatment of XS with the cell... 

Pratt, R. F. Govardhan, C. P. P-Lactamase-catalyzed hydrolysis of acyclic depsipeptides and acyl transfer to specific amino acid acceptors. Proc. Natl. Acad Sci. USA 1984, 81, 1302-1306. 

Govardhan, C. P. Pratt, R. F. Kinetics and mechanism of the serine P-lactamase catalyzed hydrolysis of depsipeptides. Biochemistry 1987, 26, 3385-3395. 

Cabaret, D. Adediran, S. A. Garcia Gonzalez, M. J. Pratt, R. F. Wakselman, M. Synthesis and reactivity with P-lactamases of penicillin-like cyclic depsipeptides. J. Org. Chem. 1999, 64, 713-720. 

As an example for the synthesis of a 14C-labeled depsipeptide from 14C-glycine and serine by the imidazolide method, see reference [78]. 

Especially sensitive and selective potassium and some other ion-selective electrodes employ special complexing agents in their membranes, termed ionophores (discussed in detail on page 445). These substances, which often have cyclic structures, bind alkali metal ions and some other cations in complexes with widely varying stability constants. The membrane of an ion-selective electrode contains the salt of the determined cation with a hydrophobic anion (usually tetraphenylborate) and excess ionophore, so that the cation is mostly bound in the complex in the membrane. It can readily be demonstrated that the membrane potential obeys Eq. (6.3.3). In the presence of interferents, the selectivity coefficient is given approximately by the ratio of the stability constants of the complexes of the two ions with the ionophore. For the determination of potassium ions in the presence of interfering sodium ions, where the ionophore is the cyclic depsipeptide, valinomycin, the selectivity coefficient is Na+ 10"4, so that this electrode can be used to determine potassium ions in the presence of a 104-fold excess of sodium ions. 

These substances include primarily depsipeptides (compounds whose structural units consist of alternating amino acid and ar-hydroxy acid units). Their best-known representative is the cyclic antibiotic, valinomycin, with a 36-membered ring [L-Lac-L-Val-D-Hy-i-Valac-D-Val]3, which was isolated from a culture of the microorganism, Streptomyces fulvissimus. Figure 6.13 depicts the structure of free valinomycin and its complex with a potassium ion, the most important of the coordination compounds of valinomycin. 

TE-catalyzed cyclization is not limited to the synthesis of macrocyclic peptides by catalyzing the formation of aC N bond. These enzymes are also responsible for the cyclization of NRP depsipeptide and PK lactone. Indeed, a di-domain excised from fengycin synthase was... 

Larvae of the tunicate Trididemnum solidum are most likely protected by didemnins like 44-46, cyclic depsipeptides that were initially identified from adults of this species [92]. The larvae are highly unpalatable to the wrasse Thalassoma bifasciatum, which rejected the larvae while readily consuming krill eyes that served as larval mimics. Coating one krill eye with the lipid soluble compounds from a single T. solidum larva rendered it as unpalatable as the larvae themselves. Reduced feeding was also observed when didemnin B (45) and nor-didemnin B (46) were administered to reef fishes in the field (Scheme 12) [92]. 

S)-Isopropylmorpholine-2,5-dione, six-membered depsipeptide, was polymerized by lipase PC and PPL catalysts [112]. High temperature (100°C or 130°C) was required for the polymerization, yielding biodegradable poly(de-psipeptide). During the polymerization, the racemization of the valine residue took place. Demonstrated was PPL-catalyzed ring-opening polymerization of ethylene isopropyl phosphate, five-membered cyclic phosphate [113]. 

Case Study Development of Istodax (romidepsin, NSC 630176, depsipeptide), Fujisawa Pharmaceutical Co. 

Fig. 3 Examples of monomer units having reactive side-chain groups, which can be copolymerized with polyesters (a) a-malic acid, (b) [S-malic acid, (c) a-carboxyl- -caprolactone, (d) carboxy lactic acid, (e) trimethylene carbonate derivative, and (1) depsipeptide...

Initially PDPs were synthesized by stepwise polycondensation of linear activated depsipeptide [93]. In 1985, Helder, Feijen and coworkers reported the synthesis of PDPs by ROP of a morpholine-2,5-dione derivative (cyclic dimer of ot-hydroxy- and a-amino acid cyclodepsipeptide, cDP) [94, 95]. The ROP method gives an alternative type of PDP by homopolymerization and also allows the copolymerization with other monomers (lactones and cyclic diesters) including LA, GA, and CL to give a wide variety of functional biodegradable materials. The synthesis of PDPs as functional biomaterials has been recently reviewed [17]. 

Fig. 4 Synthesis of polydepsipeptides and poly(depsipeptide-co-lactide)s having reactive side-chain groups...

The most prominent application of the Ru-arene chemistry has been for the preparation of biaryl ethers in the syntheses of portions of vancomycin,467 ristocetin (Equation (127)),462,468-473 and teicoplanin (see also Section 10.14.1.2).474-476 Additional applications477-479 have included the syntheses of the macrocyclic biaryl ether-containing compounds K-13480,481 and OF4949-III,481,482 several macrocyclic depsipeptides,483,484 and poly(phenylene oxide) polymers.485... 

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