Cytochrome photosynthesis

Despite considerable efforts very few membrane proteins have yielded crystals that diffract x-rays to high resolution. In fact, only about a dozen such proteins are currently known, among which are porins (which are outer membrane proteins from bacteria), the enzymes cytochrome c oxidase and prostaglandin synthase, and the light-harvesting complexes and photosynthetic reaction centers involved in photosynthesis. In contrast, many other membrane proteins have yielded small crystals that diffract poorly, or not at all, using conventional x-ray sources. However, using the most advanced synchrotron sources (see Chapter 18) it is now possible to determine x-ray structures from protein crystals as small as 20 pm wide which will permit more membrane protein structures to be elucidated. 

While this electron flow takes place, the cytochrome on the periplasmic side donates an electron to the special pair and thereby neutralizes it. Then the entire process occurs again another photon strikes the special pair, and another electron travels the same route from the special pair on the periplasmic side of the membrane to the quinone, Qb, on the cytosolic side, which now carries two extra electrons. This quinone is then released from the reaction center to participate in later stages of photosynthesis. The special pair is again neutralized by an electron from the cytochrome. 

A decade after the discovery of the Rieske protein in mitochondria (90), a similar FeS protein was identified in spinach chloroplasts (91) on the basis of its unique EPR spectrum and its unusually high reduction potential. In 1981, the Rieske protein was shown to be present in purified cytochrome Sg/complex from spinach (92) and cyanobacteria (93). In addition to the discovery in oxygenic photosynthesis, Rieske centers have been detected in both single-RC photosynthetic systems [2] (e.g., R. sphaeroides (94), Chloroflexus (95)) and [1] (Chlo-robium limicola (96, 97), H. chlorum (98)). They form the subject of a review in this volume. 

In contrast to common usage, the distinction between photosynthetic and respiratory Rieske proteins does not seem to make sense. The mitochondrial Rieske protein is closely related to that of photosynthetic purple bacteria, which represent the endosymbiotic ancestors of mitochondria (for a review, see also (99)). Moreover, during its evolution Rieske s protein appears to have existed prior to photosynthesis (100, 101), and the photosynthetic chain was probably built around a preexisting cytochrome be complex (99). The evolution of Rieske proteins from photosynthetic electron transport chains is therefore intricately intertwined with that of respiration, and a discussion of the photosynthetic representatives necessarily has to include excursions into nonphotosynthetic systems. 

Studies (see, e.g., (101)) indicate that photosynthesis originated after the development of respiratory electron transfer pathways (99, 143). The photosynthetic reaction center, in this scenario, would have been created in order to enhance the efficiency of the already existing electron transport chains, that is, by adding a light-driven cycle around the cytochrome be complex. The Rieske protein as the key subunit in cytochrome be complexes would in this picture have contributed the first iron-sulfur center involved in photosynthetic mechanisms (since on the basis of the present data, it seems likely to us that the first photosynthetic RC resembled RCII, i.e., was devoid of iron—sulfur clusters). 

Chlorophyll, plastoquinone, and cytochrome are complicated molecules, but each has an extended pattern of single bonds alternating with double bonds. Molecules that contain such networks are particularly good at absorbing light and at undergoing reversible oxidation-reduction reactions. These properties are at the heart of photosynthesis. 

The many redox reactions that take place within a cell make use of metalloproteins with a wide range of electron transfer potentials. To name just a few of their functions, these proteins play key roles in respiration, photosynthesis, and nitrogen fixation. Some of them simply shuttle electrons to or from enzymes that require electron transfer as part of their catalytic activity. In many other cases, a complex enzyme may incorporate its own electron transfer centers. There are three general categories of transition metal redox centers cytochromes, blue copper proteins, and iron-sulfur proteins. 

Peroxidase activity has long been associated with extracts of plant tissue and the crystalline enzyme from horse radish root has been studied in extenso, particularly in regard to its mechanism of action (11). Plants also contain ferredoxin and various specialized cytochromes, both of which substances play an essential role in photosynthesis (95, 96). Agavain, a crystalline proteolytic enzyme from the leaves of Agave,... 

Fig. 6.9 The catalysts for denitrification. Nitrate is reduced by a molybdenum enzyme while nitrite and oxides of nitrogen are reduced today mainly by copper enzymes. However, there are alternatives, probably earlier iron enzymes. The electron transfer bct complex is common to that in oxidative phosphorylation and similar to the bf complex of photosynthesis, while cytochrome c2 is to be compared with cytochrome c of oxidative phosphorylation. These four processes are linked in energy capture via proton (H+) gradients see Figure 6.8(a) and (b) and the lower parts of Fig. 6.9 which show separately the active site of the all iron NO-reductase, and the active site of cytochrome oxidase (02 reductase).

The cytochromes are another group of haem proteins found in all aerobic forms of life. Cytochromes are electron carriers involving a Fe(ii)/Fe(m) redox system. They are a crucial part of the electron transfer reactions in mitochondria, in aspects of the nitrogen cycle, and in enzymic processes associated with photosynthesis. 

Porphyrins 21 are the backbone of major players in life cycles—cytochromes (Scheme 8). There are three types of cytochromes, classified by their color, or more precisely by their long-wavelength absorption band, as a (600 mn), b (563 nm), and c (550 nm). They are protein conjugates of a porphyrin complex with iron(II), which is a coenzyme called heme (22). In plants, porphyrins form a complex with magnesium-(II) chlorophylls a and b (23), vital in photosynthesis. Porphyrin derivatives are used in photodynamic therapy for dermatological diseases such as psoriasis, and for skin or subcutaneous cancer.5c-e... 

Most mechanisms which control biological functions, such as cell respiration and photosynthesis (already discussed in Chapter 5, Section 3.1), are based on redox processes. In particular, as shown again in Figure 1, it is evident that, based on their physiological redox potentials, in photosynthesis a chain of electron carriers (e.g. iron-sulfur proteins, cytochromes and blue copper proteins) provides a means of electron transport which is triggered by the absorption of light. 

Fe Cytochrome oxidase reduction of oxygen to water Cytochrome P-450 0-insertion from O2, and detoxification Cytochromes b and c electron transport in respiration and photosynthesis Cytochrome f photosynthetic electron transport Ferredoxin electron transport in photosynthesis and nitrogen fixation Iron-sulfur proteins electron transport in respiration and photosynthesis Nitrate and nitrite reductases reduction to ammonium... 

Heme coenzymes (8) with redox functions exist in the respiratory chain (see p. 140), in photosynthesis (see p. 128), and in monooxygenases and peroxidases (see p. 24). Heme-containing proteins with redox functions are also referred to as cytochromes. In cytochromes, in contrast to hemoglobin and myoglobin, the iron changes its valence (usually between +2 and +3). There are several classes of heme (a, b, and c), which have different types of substituent - Ri to - R 3. Hemoglobin, myoglobin, and the heme enzymes contain heme b. Two types of heme a are found in cytochrome c oxidase (see p. 132), while heme c mainly occurs in cytochrome c, where it is covalently bound with cysteine residues of the protein part via thioester bonds. 

Proton gradients can be built up in various ways. A very unusual type is represented by bacteriorhodopsin (1), a light-driven proton pump that various bacteria use to produce energy. As with rhodopsin in the eye, the light-sensitive component used here is covalently bound retinal (see p. 358). In photosynthesis (see p. 130), reduced plastoquinone (QH2) transports protons, as well as electrons, through the membrane (Q cycle, 2). The formation of the proton gradient by the respiratory chain is also coupled to redox processes (see p. 140). In complex III, a Q,cycle is responsible for proton translocation (not shown). In cytochrome c oxidase (complex IV, 3), trans-... 

In plants, algae and cyanobacteria the light-induced charge separation of photosynthesis occurs in 2 large membrane proteins, called photosystem (PS) I and II. PS I catalyzes the ET from plastocyanin (or cytochrome c6) on the luminal side to ferrodoxin (or flavodoxin) on the stromal side of the membrane (for review see reference 177). PS I from the cyanobacterium Thermo(Y13)synechococcus (T.) elongatus was crystallized and an X-ray crystallographic structure at 2.5 A resolution has recently been obtained.18,178 Very recently, the structure from plant PS I has also been reported with a resolution of 4.4 A.179... 

In photosynthesis radical-ions and triplet states of the pigments, radical-pairs and biradicals involving various chlorophylls and quinones, amino acid radicals, hemes in cytochromes, metal clusters of low and higher nuclearity and even coupled metallo-radical species have been observed. Thus the field of photosyn-... 

The Fe-S Reaction Center (Type I Reaction Center) Photosynthesis in green sulfur bacteria involves the same three modules as in purple bacteria, but the process differs in several respects and involves additional enzymatic reactions (Fig. 19-47b). Excitation causes an electron to move from the reaction center to the cytochrome bei complex via a quinone carrier. Electron transfer through this complex powers proton transport and creates the proton-motive force used for ATP synthesis, just as in purple bacteria and in mitochondria. 

Cyanobacteria can synthesize ATP by oxidative phosphorylation or by photophosphorylation, although they have neither mitochondria nor chloroplasts. The enzymatic machinery for both processes is in a highly convoluted plasma membrane (see Fig. 1-6). Two protein components function in both processes (Fig. 19-55). The proton-pumping cytochrome b6f complex carries electrons from plastoquinone to cytochrome c6 in photosynthesis, and also carries electrons from ubiquinone to cytochrome c6 in oxidative phosphorylation—the role played by cytochrome bct in mitochondria. Cytochrome c6, homologous to mitochondrial cytochrome c, carries electrons from Complex III to Complex IV in cyanobacteria it can also carry electrons from the cytochrome b f complex to PSI—a role performed in plants by plastocyanin. We therefore see the functional homology between the cyanobacterial cytochrome b f complex and the mitochondrial cytochrome bc1 complex, and between cyanobacterial cytochrome c6 and plant plastocyanin. 

Bacterial photosynthesis. What is the relationship of the Z scheme of Fig. 23-17 to bacterial photosyntheses In photoheterotrophs, such as the purple Rhodospirillum, organic compounds, e.g., succinate, serve as electron donors in Eq. 23-30. Because they can utilize organic compounds for growth, these bacteria have a relatively low requirement for NADPH or other photochemically generated reductants and a larger need for ATP. Their photosynthetic reaction centers receive electrons via cytochrome c from succinate (E° ... 

Reaction centers of purple bacteria. The exact composition varies, but the properties of reaction centers from several genera of purple bacteria are similar. In Rhodopseudomonas viridis there are three peptide chains designated H, M, and L (for heavy, medium and light) with molecular masses of 33,28, and 24 kDa, respectively. Together with a 38-kDa tetraheme cytochrome (which is absent from isolated reaction centers of other species) they form a 1 1 1 1 complex. This constitutes reaction center P870. The three-dimensional structure of this entire complex has been determined to 0.23-nm resolution288 319 323 (Fig. 23-31). In addition to the 1182 amino acid residues there are four molecules of bacteriochlorophyll (BChl), two of bacteriopheophytin (BPh), a molecule of menaquinone-9, an atom of nonheme iron, and four molecules of heme in the c type cytochrome. In 1984, when the structure was determined by Deisenhofer and Michel, this was the largest and most complex object whose atomic structure had been described. It was also one of the first known structures for a membrane protein. The accomplishment spurred an enormous rush of new photosynthesis research, only a tiny fraction of which can be mentioned here. 

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