Chloroplasts cytochrome

Rieske proteins are constituents of the be complexes that are hydro-quinone-oxidizing multisubunit membrane proteins. All be complexes, that is, bci complexes in mitochondria and bacteria, b f complexes in chloroplasts, and corresponding complexes in menaquinone-oxidizing bacteria, contain three subunits cytochrome b (cytochrome 6e in b f complexes), cytochrome Ci (cytochrome f in b(,f complexes), and the Rieske iron sulfur protein. Cytochrome 6 is a membrane protein, whereas the Rieske protein, cytochrome Ci, and cytochrome f consist of water-soluble catalytic domains that are bound to cytochrome b through a membrane anchor. In Rieske proteins, the membrane anchor can be identified as an N-terminal hydrophobic sequence (13). 

In be complexes bci complexes of mitochondria and bacteria and b f complexes of chloroplasts), the catalytic domain of the Rieske protein corresponding to the isolated water-soluble fragments that have been crystallized is anchored to the rest of the complex (in particular, cytochrome b) by a long (37 residues in bovine heart bci complex) transmembrane helix acting as a membrane anchor (41, 42). The great length of the transmembrane helix is due to the fact that the helix stretches across the bci complex dimer and that the catalytic domain of the Rieske protein is swapped between the monomers, that is, the transmembrane helix interacts with one monomer and the catalytic domain with the other monomer. The connection between the membrane anchor and the catalytic domain is formed by a 12-residue flexible linker that allows for movement of the catalytic domain during the turnover of the enzyme (Fig. 8a see Section VII). Three different positional states of the catalytic domain of the Rieske protein have been observed in different crystal forms (Fig. 8b) (41, 42) ... 

The group of the be complexes comprises bci complexes in mitochondria and bacteria and bef complexes in chloroplasts. These complexes are multisubunit membrane proteins containing four redox centers in three subunits cytochrome b (cytochrome be in bef complexes) comprising two heme b centers in a transmembrane arrangement, cyto-... 

A decade after the discovery of the Rieske protein in mitochondria (90), a similar FeS protein was identified in spinach chloroplasts (91) on the basis of its unique EPR spectrum and its unusually high reduction potential. In 1981, the Rieske protein was shown to be present in purified cytochrome Sg/complex from spinach (92) and cyanobacteria (93). In addition to the discovery in oxygenic photosynthesis, Rieske centers have been detected in both single-RC photosynthetic systems [2] (e.g., R. sphaeroides (94), Chloroflexus (95)) and [1] (Chlo-robium limicola (96, 97), H. chlorum (98)). They form the subject of a review in this volume. 

Ubiquinone or Q (coenjyme Q) (Figure 12-5) finks the flavoproteins to cytochrome h, the member of the cytochrome chain of lowest redox potential. Q exists in the oxidized quinone or reduced quinol form under aerobic or anaerobic conditions, respectively. The structure of Q is very similar to that of vitamin K and vitamin E (Chapter 45) and of plastoquinone, found in chloroplasts. Q acts as a mobile component of the respiratory chain that collects reducing equivalents from the more fixed flavoprotein complexes and passes them on to the cytochromes. 

The discovery by Knaff and Amon(32) of a light-induced photooxidation at — 189°C requiring short-wavelength light has provided information as to a possible primary electron donor for Sn. The photooxidized substance has been identified as a form of cytochrome b absorbing at 559 nm (cytochrome 559)- Pretreatment of the spinach chloroplasts with ferricyanide to oxidize... 

The flow of electrons occurs in a similar manner from the excited pigment to cytochromes, quinones, pheophytins, ferridoxins, etc. The ATP synthase in the mitochondria of a bacterial system resembles that of the chloroplast—chloroplast proton translocating ATP synthase [37]. 

Chapter 6). Other iron-sulfur proteins, so named because they contain iron sulfur clusters of various sizes, include the rubredoxins and ferredoxins. Rubredoxins are found in anaerobic bacteria and contain iron ligated to four cysteine sulfurs. Ferredoxins are found in plant chloroplasts and mammalian tissue and contain spin-coupled [2Fe-2S] clusters. Cytochromes comprise several large classes of electron transfer metalloproteins widespread in nature. At least four cytochromes are involved in the mitrochondrial electron transfer chain, which reduces oxygen to water according to equation 1.29. Further discussion of these proteins can be found in Chapters 6 and 7 of reference 13. 

The marker enzymes used in this experiment are as follows vanadate-sensitive H+-ATPase (plasma membrane), nitrate-sensitive H+-ATPase or pyrophosphatase (tonoplast), TritonX-100 stimulated-UDPase or IDPase (Golgi complex), antimycin A-insensitive NADPH cytochrome c reductase (ER), and cytochrome c oxidase (mitochondria inner membrane). NADH cytochrome c reductase activity is found to be 10 times higher than NADPH cytochrome c reductase activity. Chlorophyll content can be measured as the chloroplast marker. The chlorophyll content is calculated by the following equation. Before measurement, auto zero is performed at 750 ran. 

In addition to NAD and flavoproteins, three other types of electron-carrying molecules function in the respiratory chain a hydrophobic quinone (ubiquinone) and two different types of iron-containing proteins (cytochromes and iron-sulfur proteins). Ubiquinone (also called coenzyme Q, or simply Q) is a lipid-soluble ben-zoquinone with a long isoprenoid side chain (Fig. 19-2). The closely related compounds plastoquinone (of plant chloroplasts) and menaquinone (of bacteria) play roles analogous to that of ubiquinone, carrying electrons in membrane-associated electron-transfer chains. Ubiquinone can accept one electron to become the semi-quinone radical ( QH) or two electrons to form ubiquinol (QH2) (Fig. 19-2) and, like flavoprotein carriers, it can act at the junction between a two-electron donor and a one-electron acceptor. Because ubiquinone is both small and hydrophobic, it is freely diffusible within the lipid bilayer of the inner mitochondrial membrane and can shuttle reducing equivalents between other, less mobile electron carriers in the membrane. And because it carries both electrons and protons, it plays a central role in coupling electron flow to proton movement. 

In the overall reaction catalyzed by the mitochondrial respiratory chain, electrons move from NADH, succinate, or some other primary electron donor through flavoproteins, ubiquinone, iron-sulfur proteins, and cytochromes, and finally to 02. A look at the methods used to determine the sequence in which the carriers act is instructive, as the same general approaches have been used to study other electron-transfer chains, such as those of chloroplasts. 

Like Complex III of mitochondria, cytochrome b6f conveys electrons from a reduced quinone—a mobile, lipid-soluble carrier of two electrons (Q in mitochondria, PQb in chloroplasts)—to a water-soluble protein that carries one electron (cytochrome c in mitochondria, plastocyanin in chloroplasts). As in mitochondria, the function of this complex involves a Q cycle (Fig. 19-12) in which electrons pass, one at a time, from PQBH2 to cytochrome bs. This cycle results in the pumping of protons across the membrane in chloroplasts, the direction of proton movement is from the stromal compartment to the thylakoid lumen, up to four protons moving for each pair of electrons. The result is production of a proton gradient across the thylakoid membrane as electrons pass from PSII to PSI. Because the volume of the flattened thylakoid lumen is small, the influx of a small number of protons has a relatively large effect on lumenal pH. The measured difference in pH between the stroma (pH 8) and the thylakoid lumen (pH 5) represents a 1,000-fold difference in proton concentration—a powerful driving force for ATP synthesis. 

Cyanobacteria can synthesize ATP by oxidative phosphorylation or by photophosphorylation, although they have neither mitochondria nor chloroplasts. The enzymatic machinery for both processes is in a highly convoluted plasma membrane (see Fig. 1-6). Two protein components function in both processes (Fig. 19-55). The proton-pumping cytochrome b6f complex carries electrons from plastoquinone to cytochrome c6 in photosynthesis, and also carries electrons from ubiquinone to cytochrome c6 in oxidative phosphorylation—the role played by cytochrome bct in mitochondria. Cytochrome c6, homologous to mitochondrial cytochrome c, carries electrons from Complex III to Complex IV in cyanobacteria it can also carry electrons from the cytochrome b f complex to PSI—a role performed in plants by plastocyanin. We therefore see the functional homology between the cyanobacterial cytochrome b f complex and the mitochondrial cytochrome bc1 complex, and between cyanobacterial cytochrome c6 and plant plastocyanin. 

The extent to which an electron carrier is oxidized or reduced during photosynthetic electron transfer can sometimes be observed directly with a spectrophotometer. When chloroplasts are illuminated with 700 nm light, cytochrome/, plastocyanin, and plastoquinone are oxidized. When chloroplasts are illuminated with 680 nm light, however, these electron carriers are reduced. Explain. 

Another property that distinguishes various cytochromes is the redox potential E ° (Table 6-8), which in this discussion is given for pH 7.0. Cytochromes carry electrons between other oxidoreductase proteins of widely varying values of E°. Because of the various heme environments cytochromes have greatly differing values of E°, allowing them to function in many different biochemical systems. 97a/97b For mitochondrial cytochrome c the value of E ° is + 0.265 V but for the closely related cytochrome/of chloroplasts it is +0.365 V and for cytochrome c3 of Desulfovibrio about -0.330 V. There is more than an 0.6-volt difference between E ° ... 

Cytochromes b, a, and o. Protoheme-containing cytochromes b are widely distributed.127,128 There are at least five of them in E. coli. Whether in bacteria, mitochondria, or chloroplasts, the cytochromes b function within electron transport chains, often gathering electrons from dehydrogenases and passing them on to c-type cytochromes or to iron-sulfur proteins. Most cytochromes b are bound to or embedded within membranes of bacteria, mitochondria, chloroplasts, or endoplasmic reticulum (ER). For example, cyto-... 

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