Metalloproteins and electron transfer

Table 24 Binding Constants ) and Electron Transfer Rates (k ) for Oxidation of Some Cu Metalloproteins ...

Computer simulations of electron transfer proteins often entail a variety of calculation techniques electronic structure calculations, molecular mechanics, and electrostatic calculations. In this section, general considerations for calculations of metalloproteins are outlined in subsequent sections, details for studying specific redox properties are given. Quantum chemistry electronic structure calculations of the redox site are important in the calculation of the energetics of the redox site and in obtaining parameters and are discussed in Sections III.A and III.B. Both molecular mechanics and electrostatic calculations of the protein are important in understanding the outer shell energetics and are discussed in Section III.C, with a focus on molecular mechanics. 

The many redox reactions that take place within a cell make use of metalloproteins with a wide range of electron transfer potentials. To name just a few of their functions, these proteins play key roles in respiration, photosynthesis, and nitrogen fixation. Some of them simply shuttle electrons to or from enzymes that require electron transfer as part of their catalytic activity. In many other cases, a complex enzyme may incorporate its own electron transfer centers. There are three general categories of transition metal redox centers cytochromes, blue copper proteins, and iron-sulfur proteins. 

Fedurco M. 2000. Redox reactions of heme-containing metalloproteins Dynamic effects of self-assemhled monolayers on thermod3mamics and kinetics of c)dochrome c electron-transfer reactions. Coord Chem Rev 209 263-331. 

Outer-sphere electron transfer reactions involving the [Co(NH3)6]3+/2+ couple have been thoroughly studied. A corrected [Co(NH3)6]3+/2+ self-exchange electron transfer rate (8 x 10-6M-1s-1 for the triflate salt) has also been reported,588 which is considerably faster than an earlier report. A variety of [Co(NH3)g]3+/2+ electron transfer cross reactions with simple coordination compounds,589 organic radicals,590,591 metalloproteins,592 and positronium particles (electron/ positron pairs)593 as redox partners have been reported. 

H.B. Gray and B.G. Malmstrom, Long-range electron transfer in multisite metalloproteins. 

Metalloproteins fall into three main structure categories depending on whether the active site consists of a single coordinated metal atom, a metal-porphyrin unit, or metal atoms in a cluster arrangement. In the context of electron-transfer metalloproteins, the blue Cu proteins, cytochromes, and ferre-doxins respectively are examples of these different structure types. Attention will be confined here mainly to a discussion of the reactivity of the blue Cu protein plastocyanin. Reactions of cytochrome c are also considered, with brief mention of the [2Fe-2S] ferredoxin, and high potential Fe/S protein [HIPIP]. 

It is timely to review the reactivity of plastocyanin in the light of recent aqueous solution studies, and the elegant structural work of Freeman and colleagues on both the PCu(I) and PCu(II) forms (1 2) Plastocyanin now ranks alongside cytochrome c (3) as the electron-transfer metalloprotein for which there is most structural information. 

The aim in solution studies on metalloprotein is to be able to say more about intermolecular electron transfer processes, first of all by studying outer-sphere reactions with simple inorganic complexes as redox partners. With the information (and experience) gained it is then possible to turn to protein-protein reactions, where each reactant has its own complexities... 

Rate Constants and Reactivity. Electron-transfer reactions of plastocyanin (and other metalloproteins) are so efficient that only a narrow range of redox partners (having small driving force) can be employed. Rates are invariably in the stopped-flow range, Table I. Unless otherwise stated parsley plastocyanin... 

Chapter 6). Other iron-sulfur proteins, so named because they contain iron sulfur clusters of various sizes, include the rubredoxins and ferredoxins. Rubredoxins are found in anaerobic bacteria and contain iron ligated to four cysteine sulfurs. Ferredoxins are found in plant chloroplasts and mammalian tissue and contain spin-coupled [2Fe-2S] clusters. Cytochromes comprise several large classes of electron transfer metalloproteins widespread in nature. At least four cytochromes are involved in the mitrochondrial electron transfer chain, which reduces oxygen to water according to equation 1.29. Further discussion of these proteins can be found in Chapters 6 and 7 of reference 13. 

In the case of metalloproteins, at least two additional categories of mutation may be considered mutations that affect the coordination environment of the metal center and mutations that affect the ligand binding and/or electron transfer properties of the protein without modification of the coordination... 

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