Cationic adducts amino acids

In the case of amines, protonation that withdraws electron density from the center of reaction lowers the rate of reaction by a factor of 30 (Das and von Sonntag 1986). Besides H-abstraction from carbon [reactions (18) and (21)], the formation of N-centered radical cations is observed [reactions (19)/(22) and (20) for amino acids see, e.g Bonifacic et al. 1998 Hobel and von Sonntag 1998]. Reaction (20) is also an H-abstraction reaction. The ET reaction (19)/(22) may proceed via a (bona-fide, very short-lived) adduct (Chap. 7). 

The structures of EX and El were deduced by resolution of El into apoenzyme and free flavin-substrate adduct. The structure of this adduct was determined as 5-cyanoethy 1-1,5-dihydro FAD and that of EX was deduced to be a cationic imine resulting from elimination of NO2" from the initial 5-nitroethy 1-1,5-dihydro FAD adduct formed in the process controlled by k2 by nucleophilic attack of nitroethane carbanion on the position of oxidized flavin. The chemistry of flavin reduction by nitroethane carbanion at the active site of D-amino acid oxidase is given by the following scheme (Equation 19) in which the kinetically important... 

Many rDA reactions are carried out at temperatures of 150 C or more in solution phase and often at temperatures of 400-600 C using the flash vapor pyrolysis (FVP) method individual conditions are referenced throughout the text. However, an accelerating effect by anionic, cationic and radical substimtion on either the dienophile or at the termini of the diene fragments has been predicted by Carpenter.Experimentally, this prediction has been substantiated only for anionic substitution. In 1967, Hart reported what is likely the first example of an oxyanion-accelerated rDA reaction. Both oxyanionic " and car-banionic substituents accelerate the cycloreversion reaction such that they proceed rapidly at room temperature (for example, equation 3). In addition, acid-catalyzed rDA reactions have been reported in which protonation effectively makes the dienophile fragment of the adduct more electron deficient. Grieco has utilized a room temperature retro aza DA reactitm useful for the N-methylation of dipeptides and amino acid derivatives (equatitm 4). ... 

Electron Donation Ionization, OH-Adduct Formation, and Hydrogen Abstraction. Ionization of amino acids or peptides either through photolysis or radiolysis leads to cation radicals, the fate of which will be influenced by the nature of the compound and the medium. 

In contrast to the formation of covalent adducts at flavin or at an amino acid residue by A -cyclopropyl-Af-arylalkylamines and 2-phenylcyclopropylamine, respectively, inactivation of MAO by 1-phenylcyclopropylamine leads to both types of adducts 100). Both inactivation pathways are proposed to originate from an initial one-electron oxidation by flavin to produce a common intermediate, the amine radical cation 33 in Scheme 22 (compounds 33-39). Homolytic cyclopropyl ring opening would lead to the reactive primary alkyl radical 34, which could be captured by the active site radical, either flavin semiquinone or amino acid centered. Subsequent hydrolysis of the imine, pathway (a), forms a... 

Silverman and Zieske have rationalized how a protein nucleophile other than flavin is involved in MAO inactivation reactions, and why different inactivator compounds specifically react with flavin, protein amino acids, or both (100). Hydrogen atom donation from a cysteine residue to the flavin semiquinone radical would produce a thiyl radical, which could then capture the primary or secondary alkyl radical generated on cyclopropyl ring opening from the amine radical cation of the inactivator. The hydrogen atom abstraction reaction between the flavin and active site amino acid may be an equilibrium process such that either species could be present at any turnover. Hence, a combination of steric constraints and proximity to either the flavin semiquinone radical or the thiol radical will determine the site of adduct formation for a particular inactivator structure. A two-dimensional representation is shown in Scheme 23 (compounds 40-42), which illustrates the proposed equilibrium between the flavin semiquinone radical and amino acid as well as the proposed intermediates for the inactivation of MAO by A-(l-methylcyclopropyl)benzylamine 40 (104), rrradical center relative to the particular protein radical is consistent with proposed site of attachment of inactivator to protein 40 is near the flavin radical, such that exclusive flavin attachment occurs, 41 is positioned closer to the amino... 

A second new class of MAO mechanism-based inactivators, (aminoalkyl)tri-methylsilanes, have been reported by Silverman and Banik (114). The idea for this class of MAO inactivators is based on the known activation of the carbon-silicon bond toward homolytic cleavage reaction when the silicon atom is /3 to a radical cation (115, 116). The aminomethyl-, aminoethyl-, and (amino-propyl)trimethylsilanes are all pseudo-first-order time-dependent inactivators of beef liver MAO that reduce the flavin cofactor during the inactivation reaction. Since denaturation of the inactivated enzyme allows flavin leoxidation, covalent bond formation might be to an amino acid residue (114). The stabilities of the enzyme adducts from the (aminoalkyl)trimethylsilanes were found to be differ-... 

Oxidation of methionine residues has been widely studied. Reaction of OH is fast (k= 10 mol I s l) and proceed via formation of an OH-adduct > S-OH, the hydroxy sulfuranyl radical (42). This radical eliminates water, yielding the monomeric radical cation >S + which then stabilizes through formation of >S-X radical species, X= N, O or S (56). In methionine amino-acid, the free radical undergoes ring closure with the amine function to give cyclic >SN radical (57) which then gets decarboxylated. Final compound seems to be methionine sulfoxide. When methionine is in a peptide, the fate of the hydroxy sulfuranyl radical is strongly dependent on the position of methionine in the peptide. 

Sodium affinities of common matrices are in the range of 140-170 kJ/mol, compared to >150kJ/mol for amino acids and >160 for dipeptides. Nucleobases and carbohydrates have even higher amities, 164—190 and >160kJ/mol, respectively. Differences in matrix and analyte Na affinities are evidently smaller than for proton transfer or even unfavorable, so adduct formation often needs to be optimized by choosing a matrix with a particularly low cation affinity. Dithranol (1,8-dihydroxyan-throne) is one such matrix and has become preferred over common matrices like sinapinic acid, DHB, or THAP for this application. It was discovered empirically, but its performance is now imderstood to be consistent with its cation transfer thermodynamics. The same is tme for other matrices, as shown in various cationization studies. ... 

There is also evidence for stable 3,4-adducts from the X-ray analysis of 2-amino-4-ethoxy-3,4-dihydropteridinium bromide, the nucleophilic addition product of 2-aminopteridine hydrobromide and ethanol (69JCS(B)489). The pH values obtained by potentiometric titration of (16) with acid and back-titration with alkali produces a hysteresis loop, indicating an equilibrium between various molecular species such as the anhydrous neutral form and the predominantly hydrated cation. Table 1 illustrates more aspects of this anomaly. 2-Aminop-teridine, paradoxically, is a stronger base than any of its methyl derivatives each dimethyl derivative is a weaker base than either of its parent monomethyl derivatives. Thus the base strengths decrease in the order in which they are expected to increase, with only the 2-amino-4,6,7-trimethylpteridine out of order, being more basic than the 4,7-dimethyl derivative. 

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