Calculated electron densities components

The 327-670 GHz EPR spectra of canthaxanthin radical cation were resolved into two principal components of the g-tensor (Konovalova et al. 1999). Spectral simulations indicated this to be the result of g-anisotropy where gn=2.0032 and gi=2.0023. This type of g-tensor is consistent with the theory for polyacene rc-radical cations (Stone 1964), which states that the difference gxx gyy decreases with increasing chain length. When gxx-gyy approaches zero, the g-tensor becomes cylindrically symmetrical with gxx=gyy=g and gzz=gn. The cylindrical symmetry for the all-trans carotenoids is not surprising because these molecules are long straight chain polyenes. This also demonstrates that the symmetrical unresolved EPR line at 9 GHz is due to a carotenoid Jt-radical cation with electron density distributed throughout the whole chain of double bonds as predicted by RHF-INDO/SP molecular orbital calculations. The lack of temperature... 

It must be noted that there are a number of more or less arbitrary assumptions made in this work30,31 which need justification, as well as parameters whose values should be calculated rather than assumed. For instance, the importance of the distance dl9 taken as equal to Rc, has been mentioned. In principle, the value of this distance is a consequence of the forces between components of the metal and molecules of solvent, and would be calculated in a consistent model of the complete interface. This was pointed out by Yeager,18 who noted that the electron density tail of the metal determines the distance of closest approach of solvent in the interface, as well as the behavior of the solvent dipoles on the surface. Since changing qM will move the electron density tail in and out, dx should depend on the state of charge of the interface. In fact, it turns out31 that if dx varies linearly with surface charge according to... 

Once the electron density of the embedded molecule is evaluated by the SCRF calculations, the free-energy component which is due to the solvent polarization and can be expressed as ... 

The nonelectrostatic components of the free energy such as the energy of cavity formation AGcav or components that take into account atomistic details of the medium (interactions between atoms inside the cavity and those in the medium) are calculated using empirical approximations (see Reference 164 for review or 165 for recent developments). These terms are do not affect the SCF procedure since their dependence on electron density p is usually neglected. 

Once a suitable crystal is obtained and the X-ray diffraction data are collected, the calculation of the electron density map from the data has to overcome a hurdle inherent to X-ray analysis. The X-rays scattered by the electrons in the protein crystal are defined by their amplitudes and phases, but only the amplitude can be calculated from the intensity of the diffraction spot. Different methods have been developed in order to obtain the phase information. Two approaches, commonly applied in protein crystallography, should be mentioned here. In case the structure of a homologous protein or of a major component in a protein complex is already known, the phases can be obtained by molecular replacement. The other possibility requires further experimentation, since crystals and diffraction data of heavy atom derivatives of the native crystals are also needed. Heavy atoms may be introduced by covalent attachment to cystein residues of the protein prior to crystallization, by soaking of heavy metal salts into the crystal, or by incorporation of heavy atoms in amino acids (e.g., Se-methionine) prior to bacterial synthesis of the recombinant protein. Determination of the phases corresponding to the strongly scattering heavy atoms allows successive determination of all phases. This method is called isomorphous replacement. 

Abstract. Investigation of P,T-parity nonconservation (PNC) phenomena is of fundamental importance for physics. Experiments to search for PNC effects have been performed on TIE and YbF molecules and are in progress for PbO and PbF molecules. For interpretation of molecular PNC experiments it is necessary to calculate those needed molecular properties which cannot be measured. In particular, electronic densities in heavy-atom cores are required for interpretation of the measured data in terms of the P,T-odd properties of elementary particles or P,T-odd interactions between them. Reliable calculations of the core properties (PNC effect, hyperfine structure etc., which are described by the operators heavily concentrated in atomic cores or on nuclei) usually require accurate accounting for both relativistic and correlation effects in heavy-atom systems. In this paper, some basic aspects of the experimental search for PNC effects in heavy-atom molecules and the computational methods used in their electronic structure calculations are discussed. The latter include the generalized relativistic effective core potential (GRECP) approach and the methods of nonvariational and variational one-center restoration of correct shapes of four-component spinors in atomic cores after a two-component GRECP calculation of a molecule. Their efficiency is illustrated with calculations of parameters of the effective P,T-odd spin-rotational Hamiltonians in the molecules PbF, HgF, YbF, BaF, TIF, and PbO. 

Nevertheless, calculation of such properties as spin-dependent electronic densities near nuclei, hyperfine constants, P,T-parity nonconservation effects, chemical shifts etc. with the help of the two-component pseudospinors smoothed in cores is impossible. We should notice, however, that the above core properties (and the majority of other properties of practical interest which are described by the operators heavily concentrated within inner cores or on nuclei) are mainly determined by electronic densities of the valence and outer core shells near to, or on, nuclei. The valence shells can be open or easily perturbed by external fields, chemical bonding etc., whereas outer core shells are noticeably polarized (relaxed) in contrast to the inner core shells. Therefore, accurate calculation of electronic structure in the valence and outer core region is of primary interest for such properties. 

Due to the electric quadrupole interaction, the Mi = 1/2 and Mi = 3/2 components of the 7 = 3/2 state of 57Fe split up, giving rise to the quadrupole splitting. Derived from the interaction of the nuclear quadrupole moment with the electric field gradient at the iron nuclei, AEq provides information about the asymmetry of the electron density around the iron nucleus. The electric field gradient at the iron nucleus can be calculated to obtain AEq (97). Since both 6 and AEq are related to the electron density at the nucleus, basis sets with an enlarged flexibility at the core region... 

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