Coenzyme analogs

The M. thermoautotrophicum Marburg HR is similar to other known disulfide reductases in some ways [131], probably including the use of FAD in catalysis. But unlike others, the HR does not use a nicotinamide (or its functional analog, coenzyme F420) as electron carrier, and it possesses Fe/S centers [131]. 

DR Light, C Walsh, MA Marietta. Analytical and preparative high-performance hquid chromatography separation of flavin and flavin analog coenzymes. Anal Biochem 109 87-93, 1980. 

The introduction to Section 26 8 pointed out that mevalonic acid is the biosynthetic pre cursor of isopentenyl pyrophosphate The early steps m the biosynthesis of mevalonate from three molecules of acetic acid are analogous to those m fatty acid biosynthesis (Sec tion 26 3) except that they do not involve acyl earner protein Thus the reaction of acetyl coenzyme A with malonyl coenzyme A yields a molecule of acetoacetyl coenzyme A... 

Zincke salts have played an important role in the synthesis of NAD /NADH coenzyme analogs since a 1937 report on the Zincke synthesis of dihydropyridine 7 for use in a redox titration study.The widely utilized nicotinamide-derived Zincke salt 8, first synthesized by Lettre was also used by Shifrin in 1965 for the preparation and study of NAD /NADH analogs. In 1972, Secrist reported using 8 for synthesis of simplified NAD analogs such as 10 for use in spectroscopic studies (Scheme 8.4.4). Subsequent utilization of 8 is discussed later in this article. 

Biomimetic oxidation and asymmetric reduction with coenzyme NAD analogs 99YGK512. 

Step 1 of Figure 29.13 Carboxylation Gluconeogenesis begins with the carboxyl-afion of pyruvate to yield oxaloacetate. The reaction is catalyzed by pyruvate carboxylase and requires ATP, bicarbonate ion, and the coenzyme biotin, which acts as a carrier to transport CO2 to the enzyme active site. The mechanism is analogous to that of step 3 in fatty-acid biosynthesis (Figure 29.6), in which acetyl CoA is carboxylated to yield malonyl CoA. 

Pyridoxal phosphate mainly serves as coenzyme in the amino acid metabolism and is covalently bound to its enzyme via a Schiff base. In the enzymatic reaction, the amino group of the substrate and the aldehyde group of PLP form a Schiff base, too. The subsequent reactions can take place at the a-, (3-, or y-carbon of the respective substrate. Common types of reactions are decarboxylations (formation of biogenic amines), transaminations (transfer of the amino nitrogen of one amino acid to the keto analog of another amino acid), and eliminations. 

The degradation of vinyl chloride and ethene has been examined in Mycobacterium sp. strain JS 60 (Coleman and Spain 2003) and in Nocardioides sp. strain JS614 (Mattes et al. 2005). For both substrates, the initially formed epoxides underwent reaction with reduced coenzyme M and, after dehydrogenation and formation of the coenzyme A esters, reductive loss of coenzyme M acetate resulted in the production of 5-acetyl-coenzyme A. The reductive fission is formally analogous to that in the glutathione-mediated reaction. 

It was shown that by analogy with benzoate itself, benzoyl-coenzyme A synthetase was induced by... 

Lenhert and Hodgkin (15) revealed with X-ray diffraction techniques that 5 -deoxyadenosylcobalamin (Bi2-coenzyme) contained a cobalt-carbon o-bond (Fig. 3). The discovery of this stable Co—C-tr-bond interested coordination chemists, and the search for methods of synthesizing coen-zyme-Bi2 together with analogous alkyl-cobalt corrinoids from Vitamin B12 was started. In short order the partial chemical synthesis of 5 -de-oxyadenosylcobalamin was worked out in Smith s laboratory (22), and the chemical synthesis of methylcobalamin provided a second B 12-coenzyme which was found to be active in methyl-transfer enzymes (23). A general reaction for the synthesis of alkylcorrinoids is shown in Fig. 4. 

Structures of CHS complexed with different Coenzyme A (CoA) thioesters and product analogs (i.e., naringenin and resveratrol) demonstrate that the active site is buried within an interior cavity located in the cleft between the upper and lower domains of each monomer (Fig. 12.3). Considering the complexity of the reaction... 

S. Subramanian, J. B. A. Ross, L. Brand, and P. D. Ross, Investigation of the nature of enzyme-coenzyme interactions in binary and ternary complexes of liver alcohol dehydrogenase with coenzymes, coenzyme analogs, and substrate analogs by ultraviolet absorption and phosphorescence spectroscopy, Biochemistry 20, 4086-4093 (1981). 

The Canadian school has recently shown that the production of the higher lignin precursors, i.e. the /i-coumaryl alcohols or their glucosides, does not proceed via the simple acids shown in Fig. 2 but actually via insoluble esters of same. The esters arc probably activated esters of coenzyme A, but esters of quinic acid analogous to chlorogenic acid arc also feasible in this role 35). 

To investigate the cofactor requirement and the characteristics of the enzyme, the effects of additives were examined using phenylmalonic acid as the representative substrate. The addition of ATP or ADP to the enzyme reaction mixtures, with or without coenzyme A, did not enhance the rate of reaction. From these results, it is concluded that these co-factors are not necessary for this decarboxylase. It is well estabhshed that avidin is a potent inhibitor of the bio-tin-enzyme complex [11 -14]. In the present case, addition of avidin has no influence on the decarboxylase activity, indicating that the AMDase is not a biotin enzyme. Thus, the co-factor requirements of AMDase are entirely different from those of known analogous enzymes, such as acyl-CoA carboxylases [15], methyhnalonyl-CoA decarboxylases [11] and transcarboxylases [15,16]. 

Work in the Imperiali laboratory has also focused on exploring the ability of minimal peptide scaffolds to augment the rate of coenzyme-mediated transaminations [22-25]. To accomplish this, a strategy has been developed in which the core functionality of the coenzyme is incorporated as an integral constituent of an unnatural coenzyme amino acid chimera construct. Thus, non-cova-lent binding of the coenzyme to the peptide or protein scaffold is unnecessary. Both the pyridoxal and pyridoxamine analogs have been synthesized in a form competent for Fmoc-based solid phase peptide synthesis (SPPS) (Fig. 7) [23,24]. 

The reaction involves formation of an imine through reaction of ammonia with the ketone, followed by reduction of this imine (see Section 7.7.1). As we noted earlier (see Section 15.1.1), nicotinamide coenzymes may also participate in imine reductions as well as aldehyde/ketone reductions, further emphasizing the imine-carbonyl analogy (see Section 7.7.1). The reverse reaction, removal of ammonia from glutamate, is also of importance in amino acid catabolism. 

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