Amino acids, acylation syntheses

Brusilow, S., Tinker, J. and Batshaw, M. L. Amino acid acylation A mechanism of nitrogen excretion in inborn errors of urea synthesis. Science 207 659,1980. 

Although the simplest route to prepare hydroxamic acid derivatives remains the reaction of hydroxylamine with acid chlorides, this last method cannot be apphed to all Af-protected-a-amino acids. The synthesis of Fmoc-protected amino acid hydroxamates represents the only exception to this rule . In fact, Fmoc-amino acid hydroxamates 98 can be synthesized by the acylation of hydroxylamine using Fmoc-amino acid chlorides 97 in the presence of MgO (Scheme 52). The route is simple, efficient, and affords good yields of products. 

This reaction is accomplished by three megasynthases consisting of 3491, 3567, and 3172 amino acids. The synthesis of deoxyerythronolide B begins with propionyl CoA linked to a phosphopantetheine chain connected to an acyl carrier protein domain. Similarly, the precursor of penicillin [A-(l-aminoadipyl)-l-cysteinyl-d-valine, or ACV] is generated by the following reaction ... 

Ohba and co-workers developed a general synthesis of chiral iV-protected 5-(aminomethyl)oxazoles from a-lithiated isocyanides and Af-protected amino acid esters (Scheme 1.101). Metalation of an alkyl or benzyl isocyanide with n-BuLi or LDA and acylation with an A-Boc-ot-amino acid methyl ester afforded an iV-Boc-a-amino acid acyl isocyanide 369, which cyclized to a chiral A-Boc-5-(aminomethyl) oxazole 370. The products were obtained in > 98% ee based on chiral HPLC analysis. The yields of 370 were somewhat variable, ranging from 45 to 91%. A-Boc-protected glycine, alanine, phenylalanine, proline, serine, and (9-benzyl serine were all compatible with these reaction conditions. 

When the transfer of activated valine from enzyme to tRNA is measured at various temperatures, the transfer is quantitative up to 55° C, but then it drops slowly between 55 and 60° C (80% of transfer at 60° C) and rapidly between 60 and 65° C (no transfer at 65° C). Yet at 65° C the enzyme catalyzes the amino acid acylation at normal rates. Again the findings were interpreted to mean that conformational changes in tRNA interfered with its ability to react with the enzyme. Transfer RNA forms a link between most of the individual components involved in protein synthesis, amino acyl RNA, ribosomes, and messenger RNA. 

Amino acid-based surfactants are derived from simple amino acids or mixed amino acids from synthesis or protein hydrolysates. They are composed of amino acid as the hydrophilic part and a long hydrocarbon chain as the hydrophobic part. The hydrophobic chain can be introduced through acyl, ester, amide, or alkyl linkage. Interest in amino acid surfactants is not new, as shown by early work in the area. In 1909, Bondi performed the first research on the introduction of a hydrophobic group to obtain A-acylgiycine and A-acyla-lamine [18], Subsequent work in this area focused on A-acylamino acids, as reported by Funk [19], Izar [20], Karrer [21], Staudinger and Becker [22],... 

Yao K, Zhao M, Zhang X, Wang Y, Li L, Zheng M, Peng S (2011) A class of oral N-[(lS,3S)-l-methyl-l,2,3,4-tetrahydro-b-carboline-3-carbonyl]- NO-(amino-acid-acyl) hydrazine Discovery, synthesis, in vitro anti-platelet aggregation/in vivo anti-thrombotic evaluation and 3D QSAR analysis. Eur J Med Chem 46 3237-3249... 

Few microbial proteases acting on n-peptides are known. The alkaline D-peptidase (ADP) from Bacillus cereus is related to Du-carboxypeptidase and p-lactamases. These enz unes have an accessible groove in which the nucleophilic serine and other catalytic amino acids are located. This n-peptidase could be applied for the synthesis of the 92-amino acid peptidyl prolyl cis-trans isomerase from Escherichia coli by condensation of two peptide fragments, of which the 35-amino acid acyl donor was activated as the OGp ester [62]. Thus the D-amino acid-selective enzyme was used for preparing a protein composed of L-amino acids and making the product insensitive to hydrolysis by the coupling enzyme. 

Then N-Boc-O-benzylserine is coupled to the free amino group with DCC. This concludes one cycle (N° -deprotection, neutralization, coupling) in solid-phase synthesis. All three steps can be driven to very high total yields (< 99.5%) since excesses of Boc-amino acids and DCC (about fourfold) in CHjClj can be used and since side-reactions which lead to soluble products do not lower the yield of condensation product. One side-reaction in DCC-promoted condensations leads to N-acylated ureas. These products will remain in solution and not reaa with the polymer-bound amine. At the end of the reaction time, the polymer is filtered off and washed. The times consumed for 99% completion of condensation vary from 5 min for small amino acids to several hours for a bulky amino acid, e.g. Boc-Ile, with other bulky amino acids on a resin. A new cycle can begin without any workup problems (R.B. Merrifield, 1969 B.W. Erickson, 1976 M. Bodanszky, 1976). 

The condensation of thioacetic acid with amino acids under drastic conditions provides a useful new synthesis of thiazoles (Scheme 146) (668, 669). Instead of the amino acid, Af-acyl <279) or N-thioacylamino acids (278) are used. 

In these cases, it is better to protect the carboxyl group. Optimized conditions for A/-acetylation have been studied (78). A/-Acylation can be utilized for protecting the amino group in the reaction of amino acids, for example in peptide synthesis. 

Oxazol-5(2H)-one, 2-benzylidene-4-methyl-tautomerism, 6, 186 Oxazol-5(2ff)-one, 2-methylene-isomerization, 6, 226 Oxazol-5(2H)-one, 2-trifluoromethyl-acylation, 6, 201 Oxazol-5(4ff)-one, 4-allyl-thermal rearrangements, 6, 199 Oxazol-5(4H)-one, 4(arylmethylene)-Friedel-Crafts reactions, 6, 205 geometrical isomerism, 6, 185 Oxazol-5(4ff)-one, 4-benzylidene-2-phenyl-configuration, 6, 185 photorearrangement, 6, 201 Oxazol-5(4ff)-one, 4-benzyl-2-methyl-Friedel-Crafts reactions, 6, 205 Oxazol-5(4ff)-one, 4-methylene-in amino acid synthesis, 6, 203 Oxazol-5(4ff) -one. 2-trifluoromethyl-hydrolysis, 6, 206 Oxazolones... 

Claisen ester condensation, 6, 279 Thiazolecarboxylic acid chlorides reactions, 6, 279-280 Thiazolecarboxylic acid hydrazides synthesis, 6, 280 Thiazolecarboxylic acids acidity, 6, 279 decarboxylation, 6, 279 reactions, S, 92 6, 274 Thiazole-2-carboxylic acids decarboxylation, S, 92 Thiazole-4-carboxylic acids stability, S, 92 Thiazole-5-carboxylic acids decarboxylation, S, 92 Thiazole-4,5-dicarboxylic acid, 2-amino-diethyl ester reduction, 6, 279 Thiazole-4,5-dicarboxylic acids diethyl ester saponification, 6, 279 Thiazolediones diazo coupling, 5, 59 Thiazoles, 6, 235-331 ab initio calculations, 6, 236 acidity, S, 49 acylation, 6, 256 alkylation, S, 58, 73 6, 253, 256 analytical uses, 6, 328 antifogging agents... 

Carbamates can be used as protective groups for ammo acids to minimize race-mization in peptide synthesis. Raccmi/ation occurs during the base-catalyzed coupling reaction of an W-protected, catboxyl-uc ivated amino acid, and takes place in the intermediate oxazolone that foro S readily from an N-acyl protected amino... 

In the second major method of peptide synthesis the carboxyl group is activated by converting it to an active ester, usually a p-nitrophenyl ester. Recall from Section 20.12 that esters react with ammonia and amines to give fflnides. p-Nitrophenyl esters are much more reactive than methyl and ethyl esters in these reactions because p-nitrophenoxide is a better (less basic) leaving group than methoxide and ethoxide. Simply allowing the active ester and a C-protected amino acid to stand in a suitable solvent is sufficient to bring about peptide bond formation by nucleophilic acyl substitution. 

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