Peptide bond, formation

To direct the synthesis so that only Phe Gly is formed the ammo group of phe nylalanme and the carboxyl group of glycine must be protected so that they cannot react under the conditions of peptide bond formation We can represent the peptide bond for matron step by the following equation where X and Y are amine and carboxyl protecting groups respectively... 

Sections 27 15 through 27 17 describe the chemistry associated with the protection and deprotection of ammo and carboxyl functions along with methods for peptide bond formation The focus m those sections is on solution phase peptide synthesis Section 27 18 shows how these methods are adapted to solid phase synthesis... 

In one method treatment of a solution containing the N protected and the C protected ammo acids with N N dicyclohexylcarbodiimide (DCCI) leads directly to peptide bond formation... 

Section 27 17 Peptide bond formation between a protected ammo acid having a free carboxyl group and a protected ammo acid having a free ammo group can be accomplished with the aid of N N dicyclohexylcarbodiimide (DCCI)... 

In addition to illustrating the mechanics of translation Figure 28 12 is important m that It shows the mechanism of peptide bond formation as a straightforward nude ophilic acyl substitution Both methionine and alanine are attached to their respective tRNAs as esters The ammo group of alanine attacks the methionine carbonyl displac mg methionine from its tRNA and converting the carbonyl group of methionine from an ester to an amide function... 

Solid phase peptide synthesis (Section 27 18) Method for peptide synthesis m which the C terminal ammo acid is co valently attached to an inert solid support and successive ammo acids are attached via peptide bond formation At the completion of the synthesis the polypeptide is removed from the support... 

Thiol esters, which are more reactive to nucleophiles than are the corresponding oxygen esters, have been prepared to activate carboxyl groups for both lactoniza-tion and peptide bond formation. For lactonization S-f-butyl and S-2-pyridyP esters are widely used. Some methods used to prepare thiol esters are shown below. The S-r-butyl ester is included in Reactivity Chart 6. 

The phenacyl group is stable to HBr-AcOH, CF3COOH, and CF3S03H. It is used to protect the Tr-nitrogen in histidine in order to reduce racemization during peptide bond formation. ... 

Show the steps involved in the synthesis of Ala-Leu from alanine and leucine using benzyloxycarbonyl and benzyl ester protecting groups and DCCI-promoted peptide bond formation. 

In the second major method of peptide synthesis the carboxyl group is activated by converting it to an active ester, usually a p-nitrophenyl ester. Recall from Section 20.12 that esters react with ammonia and amines to give fflnides. p-Nitrophenyl esters are much more reactive than methyl and ethyl esters in these reactions because p-nitrophenoxide is a better (less basic) leaving group than methoxide and ethoxide. Simply allowing the active ester and a C-protected amino acid to stand in a suitable solvent is sufficient to bring about peptide bond formation by nucleophilic acyl substitution. 

Protein-Free 50S Ribosomal Subunits Catalyze Peptide Bond Formation In Vitro... 

Perhaps the most significant case of catalysis by RNA occurs in protein synthesis. Harry F. NoIIer and his colleagues have found that the peptidyl transferase reaction, which is the reaction of peptide bond formation during protein synthesis (Figure 14.24), can be catalyzed by 50S ribosomal subunits (see Chapter 12) from which virtually ail of the protein has been removed. These... 

Zhang, B., and Cecil, T. R., 1997. Peptide bond formation by in vitro selected ribozymes. Nature 59 99- 99. 

Cleavage is achieved with H2O, IPA, or MeOH. These derivatives also serve as active esters in peptide bond formation. ... 

The Bum derivative has been used to protect the r-nitrogen of histidine to prevent racemization during peptide bond formation. The related 1-adamantyl-oxymethylamine has been used similarly for histidine protection. 

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