Alignment, definition

If we look at ISO 10013, which is referenced for guidance in preparing a quality manual, we will see that it shows that the quality manual is a top-level document containing the stated quality policy, the quality objectives, and a description of the quality system (see Figure 2.2). The definition in ISO 8402 supports this concept and the requirement aligns with this definition. However, ISO 8402, ISO 10013, and the above requirement from ISO 9001 provide a choice as to whether the manual contains or refers to procedures. 

Figure 1.25 shows the boundary layer that develops over a flat plate placed in, and aligned parallel to, the fluid having a uniform velocity upstream of the plate. Flow over the wall of a pipe or tube is similar but eventually the boundary layer reaches the centre-line. Although most of the change in the velocity component vx parallel to the wall takes place over a short distance from the wall, it does continue to rise and tends gradually to the value vx in the fluid distant from the wall (the free stream). Consequently, if a boundary layer thickness is to be defined it has to be done in some arbitrary but useful way. The normal definition of the boundary layer thickness is that it is the distance from the solid boundary to the location where vx has risen to 99 per cent of the free stream velocity v . The locus of such points is shown in Figure 1.25. It should be appreciated that this is a time averaged distance the thickness of the boundary layer fluctuates owing to the velocity fluctuations.

Finally, it is worth mentioning that alignment-free methods for evaluating molecular similarity have been tested [45]. Recently, the question about the necessary positive definite nature the MQSM matrices must possess has been put forward and a building up algorithm for a set of molecular structures has been described [53]. 

Fig. 7.15 Definition of angles for two vectors in the alignment frame. Note the relative angle 0 between the two vectors.

Multiple alignments of repeats are constructed in an iterative manner. The initial alignment is based on definitions from determined protein structures or else from the literature. In the initial database search step, a profile constructed from the multiple alignment is compared with a sequence database. Top scoring sequences are considered using complementary approaches such as PSI-BLAST and FASTA to provide the two thresholds minimum E value and minimum number of repeats per protein required. After one or two iterations, the final alignment and the thresholds are stored in the SMART database to allow the detection of repeats in any sequence. 

The instmment shown in Figure 2.4 is a double-axis instrument. The first axis is the adjustment of the beam conditioner, the second is the scan of the specimen through the Bragg angle. It is irrelevant to this definition that a practical diffractometer may contain a dozen or more controlled axes , for example, to tune and to align the beam conditioner, to locate the specimen in the beam, to align and to scan the specimen and to control shts. It is the differential movement of the two main axes that make the measnrement and determine the precision and accuracy of the instrument. This is the basic high resolntion diffractometer, which is now widely nsed for measniements of crystal perfection, epilayer composition and thickness. 

System qualification is a process that ensures that an analyzer system is installed and operated according to requirements that are aligned with the intended use of the system. The commonly used approach in the pharmaceutical industry is the system life cycle or SLC process. In the SLC approach, the definition of intended use, design, configuration, installation and operation is linked and documented over the lifetime of a system. 

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