Aldolase catalyzed reversible aldol

Aldolases - Aldolases catalyze reversible aldol condensations of su-gars. A well-studied enzyme is fructose-1,6-dlphosphate aldolase from rabbit muscle. This enzyme exhibits a high specificity for dihydroxy-acetone phosphate as the nucleophile, but tolerates a range of aldehydes as electrophiles (Scheme II).This broad specificity allows synthesis of sugars such as 6-deoxyfructose and Isotopically labeled glucose... 

The metabolism of P-hydroxy-a-amino adds involves pyridoxal phosphate-dependent enzymes, dassified as serine hydroxymethyltransferase (SHMT) (EC 2.1.2.1) or threonine aldolases (ThrA L-threonine selective = EC 4.1.2.5, L-aHo-threonine selective = EC 4.1.2.6). Both enzymes catalyze reversible aldol-type deavage reactions yielding glycine (120) and an aldehyde (Eigure 10.45) [192]. 

Zn complexes " have been prepared that model type-II aldolases, which catalyze reversible aldol addition reactions. Enolizations are essential for the carbon-carbon bond formation in an aldol reaction, and Zn may play a role in such processes. For example, activation of the carbonyl of DHAP in the active site of type-II aldolases was performed by a Zn complex of l-(4-bromophenacyl)-cyclen (59) (Scheme 38). The pAa value for the acidic protons of the carbonyl a-position was 8.4. 

FDP Aldolase. The most extensively utilized class of enzymes for monosaccharide synthesis are the aldolases (E.C. sub-class 4.1.2.). This ubiquitous group of enzymes catalyzes reversible aldol reactions in vivo. Two major groups of aldolases exist type I aldolases, found primarily in higher plants and animals, catalyze aldol condensations by means of a Schiff base formed between an enzyme lysine e-amino group and the nucleophilic carbonyl group type II aldolases, found primarily in microorganisms, utilize a divalent zinc to activate the nucleophilic component (79). Approximately 25 aldolases have been identified to date (18),... 

The metabolism of j5-hydroxy-a-amino acids involves pyridoxal phosphate-dependent enzymes, classified as serine hydroxymethyltransferase or threonine aldolases, that catalyze reversible aldol-type cleavage to aldehydes and glycine (134) [284]. 

Hyd roxy-4-methy i-2-oxog i uta-rate/4-carboxy-4-hydroxy-2-oxoadipate (HMG/CHA) aldolase catalyzed reversibly the homo-aldol addition of pyruvate (1) (HMG aldolase) and the addition of 1-38 (CHA aldolase). 

This cleavage is a retro aldol reaction It is the reverse of the process by which d fruc tose 1 6 diphosphate would be formed by aldol addition of the enolate of dihydroxy acetone phosphate to d glyceraldehyde 3 phosphate The enzyme aldolase catalyzes both the aldol addition of the two components and m glycolysis the retro aldol cleavage of D fructose 1 6 diphosphate... 

Cleavage of Fructose 1,6-Bisphosphate The enzyme fructose 1,6-bisphosphate aldolase, often called simply aldolase, catalyzes a reversible aldol condensation (p. 485). Fructose 1,6-bisphosphate is cleaved to yield two different triose phosphates, glyceraldehyde 3-phosphate, an aldose, and dihydroxyacetone phosphate, a lcetose ... 

Scheme 1 Reversible aldol addition reaction catalyzed by fructose diphosphate aldolase.

This chapter deals with the other group of aldolases that catalyzes the reversible aldol reaction of pyruvate as the nucleophilic donor and a sugar as the electrophilic acceptor. Table 1 lists the main aldolases using pyruvate that have been examined for synthetic... 

Sialic acid aldolase (SA EC 4.1.3.3), also named A-acetylneuraminate pyruvate lyase, has been extensively used by our group in its immobilized form, first for the synthesis of large amounts of A-acety lneuraminic acid [20] and then for many natural and unnatural sialic acids [21], SA catalyzes the reversible aldol reaction of A-acetylmannosamine and pyruvate to give A-acety lneuraminic acid with an optimum pH for activity of 7.5 and an equilibrium constant of 12.7 A/-1 in the synthetic direction (Scheme 3) [10],... 

Cleavage of fructose-l,6-bisphosphate, an aldolase-catalyzed reaction. The aldolase reaction entails a reversal of the familiar aldol condensation. The first step involves abstraction of the hydrogen of the C-4 hydroxyl group, followed by elimination of an enolate anion. 

The reverse aldol reaction is catalyzed by an enzyme called aldolase. One of the roles of the enzyme is to stabilize the enolate anion intermediate because such ions are too basic to be produced under physiological conditions. In animals, aldolase accomplishes this task by forming an inline bond between the carbonyl group of fructose-1,6-bisphosphate and the amino group of a lysine amino acid of the enzyme. As a result, the product of the reverse aldol step is an enamine derived from DHAP rather than its enolate anion. (Section 20.8 shows that enamines are the synthetic equivalents of enolate anions.) The formation of the strongly basic enolate anion is avoided. This process is outlined here ... 

The use of enzymes for the aldol reaction complements traditional chemical approaches. In the early twentieth century a class of enzymes was recognized that catalyzes, by an aldol condensation, the reversible formation of hexoses from their three carbon components.3 The lyases that catalyze the aldol reaction, are referred to as aldolases. More than 30 aldolases have been characterized to date. These aldolases are capable of stereospecifically catalyzing the reversible addition of a ketone or aldehyde donor to an aldehyde acceptor. Two distinct mechanistic classes of aldolases have been identified (Scheme 5.1).4... 

The aldehyde substrates may be used as racemic mixtures in many cases, as the aldolase catalyzed reactions can concomitantly accomplish kinetic resolution. For example, when DHAP was combined with d- and L-glyceraldehyde in the presence of FDP aldolase, the reaction proceeded 20 times faster with the D-enantiomer. Fuc 1-P aldolase and Rha 1-P aldolase show kinetic preferences (greater than 19/1) for the L-enantiomer of 2-hydroxy-aldehydes. Alternatively, these reactions may be allowed to equilibrate to the more thermodynamically favored products. This thermodynamic approach is particularly useful when the aldol products can cyclize to the pyranose form. Since the reaction is reversible under thermodynamic conditions, the product with the fewest 1,3-diaxial interactions will predominate. This was demonstrated in the formation of 5-deoxy-5-methyl-fructose-l-phosphate as a minor product (Scheme 5.5).20a 25 The major product, which is thermodynamically more stable, arises from the kinetically less reaction acceptor. 

The enzyme DERA, 2-deoxyribose-5-phosphate aldolase (EC 4.1.2.4), is unique among the aldolases in that the donor is an aldehyde. In vivo it catalyzes the reversible aldol reaction of acetaldehyde and D-glyceraldehyde 3-phosphate, forming 2-deoxyribose 5-phosphate, with an equilibrium lying in the synthetic direction (Scheme 5.41). DERA, the only well-characterized member of this type I aldolase, has been isolated from both animal tissue and microorganisms.67... 

The glycine-dependent aldolases are pyridoxal 5-phosphate dependent enzymes that catalyze the reversible aldol reaction, where glycine and an acceptor aldehyde form a (i-hydroxy-a-amino acid (Scheme 5.47).74 Serine hydroxymethyltransferases, SHMT (EC 2.1.2.1), and threonine aldolases, two types of glycine dependent aldolases, have been isolated. In... 

The reaction is a reverse aldol reaction catalyzed by aldolase. 

Fructose-6-phosphate formed from the isomerization discussed above is further phos-phorylated during glycolysis to fructose-1,6-diphosphate (108), which is then cleaved by fructose-1,6-bisphosphate aldolase to afford dihydroxy acetone phosphate (109) and glyceraldehyde-3-phosphate (110). This cleavage reaction is the reverse of an aldol condensation discussed in Section II.C and during gluconeogenesis. In the latter case, fructose-1,6-bisphosphate aldolase catalyzes the reverse reaction herein via aldol condensation of the ketose 109 and the aldose 110 to form linear fructose-1,6-bisphosphate (108) . 

Fructose-1,6-diphosphate (FDP) aldolase catalyzes the reversible aldol addition of DHAP and D-glyceraldehyde-3-phosphate (G3P) to form D-fructose-1,6-diphosphate (FDP), for which eq 10 M in favor of FDP formation (Scheme 13.9). RAMA accepts a wide range of aldehyde acceptor substrates with DHAP as the donor to stereospecifically generate 3S,4S vicinal diols (Scheme 13.8). The diastereoselectivity exhibited by FDP aldolase depends on the reaction conditions. Racemic mixtures of non-natural aldehyde acceptors can be partially resolved only under conditions of kinetic control. When six-membered hemiacetals can be formed, racemic mixtures of aldehydes can be resolved under conditions of thermodynamic control (Scheme 13.10). 

The aldol addition of aldehyde 38 and acetone to give aldols 39 is an excellent test reaction for a catalytic aldolization. We found that anti-33 antibodies combine with primary amine 37 to form an aldolase antibody which catalyzes the reaction with good enantioselectivities (Scheme 13) [58]. Analysis of the reverse aldolization process shows that (S)-aldols undergo retroaldolization with the... 

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