Aggregate formation, interaction with

For high enzyme DNA ratios, poly(ADP-ribose) polymerase appears to react preferenti y and cooperatively in the vicinity of poly(ADP-ribose) polymerase molecules already bound to a DNA intersection, leading to the formation of large protein aggregates in interaction with multi-looped DNA duplexes (data not shown). In the presence of single and/or double strand breaks in DNA, poly(ADP-ribose) polymerase preferentially binds to form II DNA. Under these conditions the enzyme activity is strongly stimulated (Table 1) this is in agreement with previously published woik (6,7). Direct comparison by electron microscopy between active (Fig. 4c, 4d) and inactive (Fig. 4a, 4b) poly(ADP-ribose) polymerase-DNA complexes does not explain the mechanism by which the enzyme activity is switched on. However, by this technique we have found that loop formation is a common feature observed with all the DNAs used. 

Another pathway of influence in AD is the facilitation of amyloid- 3 (A 3) aggregation through an interaction with the PAS of AChE but not of BChE. Inversely, the usual BChE (and more specifically its C-terminus) was shown recently as to attenuate in vitro the formation of amyloid fibrils [4]. 

Hydrophobic interaction chromatograph (HIC), while very attractive in principle, has proved difficult to scale up for processing. A recent series of articles explores some of the unique problems associated with process-scale HIC. Load sample preparation20 must be carefully examined to prevent protein aggregate formation in the presence of the relatively high salt concentrations used in this technique. Successful scale-up also requires the setting of wide specifications to accomodate routine variations in the feed.21 The effect of the salt concentration on capacity may be somewhat more... 

CA in which many filled cells execute a random walk but never interact with one another, cannot give rise to stable pattern formation since the cells will move at random forever. However, if cells can interact when they meet, so that one diffusing cell is allowed to stick to another, stable structures can be created. These structures illustrate the modeling of diffusion-limited aggregation (DLA), which is of interest in studies of crystal formation, precipitation, and the electrochemical formation of solids. 

Lashuel, H. A., Petre, B. M., Wall, J., Simon, M., Nowak, R. J., Walz, T., and Lansbury, P. T., Jr. (2002). Alpha-synuclein, especially the Parkinson s disease-associated mutants, forms pore-like annular and tubular protofibrils./. Mol. Biol. 322,1089-1102. LeVine, H. (1993). Thioflavine T interaction with synthetic Alzheimer s disease beta-amyloid peptides Detection of amyloid aggregation in solution. Protein Sci. 2, 404—410. Lin, H., Bhatia, R., and Lai, R. (2001). Amyloid beta protein forms ion channels Implications for Alzheimer s disease pathophysiology. FASEB J. 15, 2433-2444. Lorenzo, A., and Yankner, B. A. (1994). Beta-amyloid neurotoxicity requires fibril formation and is inhibited by Congo red. Proc. Natl. Acad. Sci. USA 91, 12243-12247. Luhrs, T., Ritter, C., Adrian, M., Riek-Loher, D., Bohrmann, B., Dobeli, H., Schubert, D., and Riek, R. (2005). 3D structure of Alzheimer s amyl o id-( be la) (1—12) fibrils. Proc. Natl. Acad. Sci. USA 102, 17342-17347. 

Braun and Alsenz6 used an ELISA to detect aggregates in interferon-alpha (IFN-a) formulations. They analyzed IFN-a formulations for possible aggregate formation because all marketed interferons are reported to induce antibodies to some extent. Because of its stabilizing effects, human serum albumin (HSA) is used in the formulation of marketed IFN-a at a great excess over IFN-a itself. HSA can also interact with other proteins. Braun and Alsenz developed an ELISA for the detection of both IFN-a-IFN-a and HSA-IFN-a aggregates. A MAb was used for the capture and detection of the IFN-a and a polyclonal for the detection of HSA. The assay is shown schematically in Figure 11.4. 

---