Acylated amino acids specifications

Resolution of Racemic Amines and Amino Acids. Acylases (EC3.5.1.14) are the most commonly used enzymes for the resolution of amino acids. Porcine kidney acylase (PKA) and the fungaly3.spet i//us acylase (AA) are commercially available, inexpensive, and stable. They have broad substrate specificity and hydrolyze a wide spectmm of natural and unnatural A/-acyl amino acids, with exceptionally high enantioselectivity in almost all cases. Moreover, theU enantioselectivity is exceptionally good with most substrates. A general paper on this subject has been pubUshed (106) in which the resolution of over 50 A/-acyl amino acids and analogues is described. Also reported are the stabiUties of the enzymes and the effect of different acyl groups on the rate and selectivity of enzymatic hydrolysis. Some of the substrates that are easily resolved on 10—100 g scale are presented in Figure 4 (106). Lipases are also used for the resolution of A/-acylated amino acids but the rates and optical purities are usually low (107). 

Hsu et have cloned two enzymes from Deimcoccus radiodurans for overexpression in E. coli in order to carry out a dynamic kinetic resolution to obtain L-homophenylalanine, frequently required for pharmaceutical synthesis. The starting material is the racemic mixture of A acetylated homophenylalanine, and the two enzymes are an amino acid A -acylase, which specifically removes the acetyl group from the L-enantiomer, and a racemase, which interconverts the D- and L-forms of the A acyl amino acids. The resolution was carried out successfully using whole-cell biocatalysts, with the two enzymes either expressed in separate E. coli strains or coexpressed in the same cells. 

Enzymes are chiral molecules with specific catalytic activities. For example, when an acylated amino acid is treated with an enzyme like hog kidney acylase or car-boxypeptidase, the enzyme cleaves the acyl group from just the molecules having the natural (l) configuration. The enzyme does not recognize D-amino acids, so they are unaffected. The resulting mixture of acylated D-amino acid and deacylated L-amino acid is easily separated. Figure 24-5 shows how this selective enzymatic deacylation is accomplished. 

Enzymatic Kinetic Resolution of N-Acyl Amino Acids Coupled with Racemization by N-Acyl Amino Acid Racemase Acylases are enzymes hydrolysing the N-acetyl derivatives of amino acids. They require the free carboxylate for activity and have long been used for the kinetic resolution of amino acids. The unreacted enantiomer is usually racemized in a separate step by treatment with acetic anhydride. While acylases from hog kidney have an L-specificity, bacterial acylases with L- and D-specificity of various origins have been isolated and used for the kinetic resolution of N-acetyl amino acids. An industrial process for the production of L-Met and other proteinogenic and non-proteinogenic L-amino acids such as L-Val, L-Phe, L-Norval, or L-aminobutyric acid has been established. Currently, several hundred tons per year of L-methionine are produced by this enzymatic conversion using an enzyme membrane reactor [46]. 

The first protease-catalyzed reaction in ILs was the Z-aspartame synthesis (Scheme 10.7) from carbobenzoxy-L-aspartate and L-phenylalanine methyl ester catalyzed by thermolysin in [BMIM] [PF ] [ 14]. Subtilisin is a serine protease responsible for the conversion of A -acyl amino acid ester to the corresponding amino acid derivatives. Zhao et al. [90] have used subtilisin in water with 15% [EtPy][CF3COO] as cosolvent to hydrolytically convert a series of A -acyl amino acid esters often with higher enantioselectivity than with organic cosolvent like acetonitrile (Scheme 10.8, Table 10.2). They specifically achieved l-serine and L-4-chlorophenylalanine with an enantiomeric access (ee) of-90% and -35% product yield which was not possible with acetonitrile as a cosolvent [90]. Another example is hydrolysis of A-unprotected amino acid ester in the presence of a cysteine protease known as papain. Liu et al. 

The second task, resolution of synthetic D,L-amino acids has been solved by conversion of the neutral amino acids into real carboxyUc acids by acylation of the amino group, either by the benzoyl or the formyl residue. The D,L-acyl amino acids then formed diastereomeric salts with optically active bases, mostly alkaloids, which differed in their solubihty in various solvents, and so could be separated by recrystallization. This method is still in use, although enzymatic procedures, specific oxidation of the D-antipode in the presence of D-amino acid oxidase or enzymatic, stereospecific removal of iV-acyl residues from d,l-AT-acetyl-amino acids by acylase, are more convenient. Certainly, L-amino acids became accessible from nature by the ester method, but without synthetic material, extended experiments of peptide couphng would have been impossible. 

Fig. 5. Synthesis of amino-acyl tRNA. Amino acids are first activated by reacting with ATP to form an aminoacyl-adenylate. This reaction is catalyzed by the same amino acid-specific enzyme, amino-acyl tRNA synthase, than the second reaction. In the second reaction, the amino acyl is transferred to the ribose of the 3 -end adenosine of the tRNA. The esterification can proceed on the 3 - (as shown) or 2 - hydroxyl of the ribose, depending on the enzyme. The amino-acyl tRNA is then involved in the elongation of the growing polypeptide chain at the level of the ribosome.

There seems to be one specific acyl amino acid synthetase for each amino acid thus, there are at least 20 such enzymes, and although the molecular weight of most of the enzymes is around 100,000 (except the phenyl RNA synthetase of E. coli and yeast, which has a molecular weight of 180,000), the amino acid composition of enzymes catalyzing identical reactions may vary. Comparisons of the electrophoretic and immunological properties and the amino acid composition of two tryosyl RNA synthetases—one purified from E. coli (mol wt 95,000) and another from B. sub-tilis (mol wt 88,000)—reveal significant differences between the two molecules. One of the most remarkable is the relative content of cystine, 15 residues in E. coli enzymes and 2 residues in B. subtilis enzymes. 

The LC-ESI-MS/MS approach is commonly used for the analysis of a small number of lipids (e.g., a preseparated lipid class). This is because only a few pairs of ion transitions can be monitored at any elution time due to the limitation of the duty cycle as aforementioned. Moreover, generation of the necessary standard curves for all species in a cellular lipidome is impractical. However, because of the increased specificity and sensitivity of detection, this SRM/MRM method is particularly useful for quantitative analysis of those lipid classes that are present in low or very low abundance in the cellular lipidomes after a few steps of prechromatographic enrichment. One such typical example is the quantitative analysis of fatty acyl amino acids [62]. 

Fox and his associates (54-58) have studied the effect of a number of factors on anilide synthesis by papain. They report that the optimal pH for anilide synthesis varies with the A-acyl amino acid used. The influence of the amino acid side chain influences the rate of anilide synthesis much as would be expected from the hydrolytic specificity of papain. 

Two amino acids form a dipeptide, three a tripeptide, eight an octapeptide, etc. If a peptide is made up of not more than ten amino acids it is called an oligopeptide beyond that it is a polypeptide. Polypeptides become proteins when they are made up of over a hundred amino acids sometimes they are also called macropeptides. Since in systematic nomenclature peptides are acyl amino acids, the specific name for peptides is derived by attaching the ending -yl to that amino acid whose carboxyl group has undergone reaction e.g. glycylalanine and alanyl-leucyltyrosine. 

Enzymatic hydrolysis is also used for the preparation of L-amino acids. Racemic D- and L-amino acids and their acyl-derivatives obtained chemically can be resolved enzymatically to yield their natural L-forms. Aminoacylases such as that from Pispergillus OTj e specifically hydrolyze L-enantiomers of acyl-DL-amino acids. The resulting L-amino acid can be separated readily from the unchanged acyl-D form which is racemized and subjected to further hydrolysis. Several L-amino acids, eg, methionine [63-68-3], phenylalanine [63-91-2], tryptophan [73-22-3], and valine [72-18-4] have been manufactured by this process in Japan and production costs have been reduced by 40% through the appHcation of immobilized cell technology (75). Cyclohexane chloride, which is a by-product in nylon manufacture, is chemically converted to DL-amino-S-caprolactam [105-60-2] (23) which is resolved and/or racemized to (24)... 

Enzymatic Method. L-Amino acids can be produced by the enzymatic hydrolysis of chemically synthesized DL-amino acids or derivatives such as esters, hydantoins, carbamates, amides, and acylates (24). The enzyme which hydrolyzes the L-isomer specifically has been found in microbial sources. The resulting L-amino acid is isolated through routine chemical or physical processes. The D-isomer which remains unchanged is racemized chemically or enzymatically and the process is recycled. Conversely, enzymes which act specifically on D-isomers have been found. Thus various D-amino acids have been... 

Acyl groups are common in bacterial polysaccharides. The parent acids are fatty acids, hydroxy acids, and amino acids. The simplest acid, formic acid, has only been found as the amide. The occurrence of O-formyl groups had been reported, but proved to be incorrect. A-Formyl groups have been found in different polysaccharides for example, in the 0-specific side-chains of the LPS from Yersinia enlerocolitica 0 9, which are composed of 4,6-dideoxy-4-formamido-D-mannopyranosyl residues. The formyl group can assume two main conformations, s-cis (41) and s-trans (42), which are... 

The regions of the tRNA molecule teferred to in Chapter 35 (and illustrated in Figure 35-11) now become important. The thymidine-pseudouridine-cyti-dine (T PC) arm is involved in binding of the amino-acyl-tRNA to the ribosomal surface at the site of protein synthesis. The D arm is one of the sites important for the proper recognition of a given tRNA species by its proper aminoacyl-tRNA synthetase. The acceptor arm, located at the 3 -hydroxyl adenosyl terminal, is the site of attachment of the specific amino acid. 

Pratt, R. F. Govardhan, C. P. P-Lactamase-catalyzed hydrolysis of acyclic depsipeptides and acyl transfer to specific amino acid acceptors. Proc. Natl. Acad Sci. USA 1984, 81, 1302-1306. 

An affinity label is a molecule that contains a functionality that is chemically reactive and will therefore form a covalent bond with other molecules containing a complementary functionality. Generally, affinity labels contain electrophilic functionalities that form covalent bonds with protein nucleophiles, leading to protein alkylation or protein acylation. In some cases affinity labels interact selectively with specific amino acid side chains, and this feature of the molecule can make them useful reagents for defining the importance of certain amino acid types in enzyme function. For example, iodoacetate and A-ethyl maleimide are two compounds that selectively modify the sulfur atom of cysteine side chains. These compounds can therefore be used to test the functional importance of cysteine residues for an enzyme s activity. This topic is covered in more detail below in Section 8.4. 

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