Template coordination

Fig. 3a,b. Template cyclization reactions of a crown ethers and b CPOs. The coordination bonds are illustrated by black arrows. In the crown ether synthesis, ethylene glycols coordinate toward the metal acting as the template (normal template reaction) however, the template coordinates to the incorporated metals of porphyrin In CPO synthesis (inverse-template reaction)... 

Over the last decade, ILs have been actively utilized for the preparation of a variety of inorganic materials, including metal particles, metal oxides, metal salts, and non-metal elements, due to their unique roles in the structural templates, coordination... 

Figure 1 DNA structure and examples of DNA assembly (a) right-handed B- and A-forms and left-handed Z-fonn of DNA duplexes and (b) DNA tiles, assembled from (i) double crossover (DX), (ii) cross-motif (CM), (iii) 3-point star, (iv) T-junction, and (v) 5-point star into periodic 2D arrays, (c) DNA origami, (d) Geometrically well-defined ssDNA templates with organic vatices are used to organize gold nanoparticles and encoded to allow for write/erase experiments, (e) Hydroxypyiidone insertions into DNA are used to selectively coordinate Cu(II) within the DNA duplex, (f) Two different ligands are site specifically incorporated to generate DNA-templated coordination environments selective for metals.

In our implementation, the same philosophy is used as in the case of distance constraints. The scoring function is a spline-fit switching function of the actual superposition RMS deviation with the template coordinates. This function is equal to — 1 below a lower cutoff value, equal to zero above an upper cutoff value, and varies smoothly in between the two. Conflicting templates can therefore be used simultaneously, and a favorable score will be obtained for structures that superpose well on any one or more of them and no penalty is assessed for distant templates. The simulation can therefore be used to identify which of the possible templates gives the best fit consistent with the connectivity of the sequence and the generic scoring function. 

Since the coordination almost certainly involves the transition metal atom, there is a resemblance here to anionic polymerization. The coordination is an important aspect of the present picture, since it is this feature which allows the catalyst to serve as a template for stereoregulation. 

Chelation itself is sometimes useful in directing the course of synthesis. This is called the template effect (37). The presence of a suitable metal ion facihtates the preparation of the crown ethers, porphyrins, and similar heteroatom macrocycHc compounds. Coordination of the heteroatoms about the metal orients the end groups of the reactants for ring closure. The product is the chelate from which the metal may be removed by a suitable method. In other catalytic effects, reactive centers may be brought into close proximity, charge or bond strain effects may be created, or electron transfers may be made possible. 

The method described here gives higher yields of the macrocyclic tetraethers and allows the product from furan and cyclohexanone to be formed directly in 5-10% yield, whereas this product was previously obtained only by an indirect route. The added lithium perchlorate undoubtedly accelerates the reaction, since after short reaction times the product was isolated in 20% yield when the salt was present and in only 5% yield when the salt was absent. The lithium cation is presumably acting as a template which coordinates with the oxygen atoms of... 

One of the prime tenets of the template effect is that a cation of appropriate size coordinates with the heteroatom binding sites in the incipient ring system. Evidence to be discussed below indicates that there is a clear relationship between the size of the coordinating cation and the size of the ring formed. Before presenting this evidence, it is useful to note the approximate ring sizes of common crowns and the known ionic diameters of sundry metal cations. This is done in Table 2.1. 

It has square planar coordination (Pd-N 2.010-2.017 A) similar to the value of 2.009 A in the tetraphenylporphyrin analogue, prepared by a similar route. As with nickel, macrocycle complexes can be made by in situ template... 

The formal [3+2+1]-cycloaddition involves an a,ft-unsaturated carbene ligand (C3-synthon),an alkyne (C2-synthon) and a carbonyl ligand (Cl-synthon) and takes place within the coordination sphere of the chromium(O), which acts as a metal template (Scheme 2). 

Because such guest molecules usually interact with the frameworks through H-bonds, van der Waals s forces, or sometimes coordination bonds, it is crucial to remove the templates properly to form structurally stable, free-pore molecular sieves. 

For microporous compounds with special compositions, calcination effects are even more severe. As compared with zeolites, these compounds have lower thermal stability. Strictly speaking, most of them are nonporous since removal of the occluded guest molecules by calcination usually results in collapse. This is due to strong H-bonds with the framework, coordination bonds, and sometimes the templating molecule is shared with the inorganic polyhedra. Relevant examples of low-stability microporous compounds with interesting structural features are zeolitic open-framework phosphates made of Ga [178], In [179], Zn [180], Fe [181],... 

The latter method, the template method, involves a reaction to produce a transition state similar to the desired product using a template. The template should have a shape similar to the space of the product. The template interacts with the substrate by forming noncovalent bonds such as coordination bonds (Fig. 3). The representative and most successful examples are found in crown ether chemistry. In the chemistry, alkali metals act as templates to create a crown-ether-like transition state with an ethylene glycol substrate by using metal-oxygen coordination bonds. 

The coupling reaction of 1 (M=Zn) affords CPO 3 (M=Zn) in 55% yield in the presence of template 2 however, the absence of 2 decreases the yield to 34% [22]. With the increase of yield of 3, template 2 induces the selectivity of the reaction the yield of the by-product (cychc dimer 4 (M=Zn)) was changed from 23% (with no template) to 6% (in the presence of template). A similar CPO formation reaction was reported for the corresponding ruthenium porphyrins (3, M=Ru(CO)), in which the stability constant of the Ru-N coordination bond is 10 larger than that of the Zn-N coordination bond [23]. Although the transition state of the CPO produced by the ruthenium-based substrate is expected to be more stable than that produced by ZnPor, the yield of 3 (M=Ru(CO)) is only... 

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