Switching mechanisms thermal models

Modified nucleosides incorporated into small RNA model systems can also be used to investigate the global versus individual effects of modified nucleotides on natural RNAs, such as rRNA or tRNA. For example, in some early studies, Yarian et al. (44) demonstrated that pseudouridine (Table 1) leads to increased thermal stability of the tRNA anticodon stem-loop region. Later, Meroueh et al. (45) demonstrated that pseudouridines have opposing effects on rRNA helix 69 stability, which depends on their specific locations and sequence contexts. These effects on stability may be important for conformational switching mechanisms in functional RNAs (46, 47). 

The first two represent the high-temperature chemistry and the second two the branch chain of the low-temperature chemistry. Griffiths [85] has criticized the model for losing the essential feature of alkane autoignition chemistry, a switch from radical branching to non-branching reactions as the temperature increases, which is responsible for the negative temperature coefficient. The model relies on thermal feedback mechanisms only. 

The model of one-dimensional carrier transport in DMA molecule has been developed. Tunneling and thermally induced hopping as the dominating transport mechanisms in periodic systems were included. DNA molecules have been estimated to operate as a switching device with the switching time as short as 10 -10 s controlled by nucleobase sequence. 

---