Structures thermodynamic/kinetic control

The factors which control the distribution of trace elements [defined arbitrarily in geochemistry as those elements present at less than 0.1 weight percent (wt %)] can be discussed under a number of headings - structural, thermodynamic, kinetic and, in the sedimentary environment, solubility and speciation. 

Phosphorylation is a highly effective means of controlling the activity of proteins for structural, thermodynamic, kinetic, and regulatory reasons ... 

It must be remembered that the formation of lamellae, whether with adjacently folded chains or with a switchboardUke structure, is kinetically controlled by the degree of undercooling and finite rates of molecular motion. The thermodynamically most stable crystal form is thought to have extended chains. 

Reactant and product structures. Because the transition state stmcture is normally different from but intermediate to those of the initial and final states, it is evident that the stmctures of the reactants and products should be known. One should, however, be aware of a possible source of misinterpretation. Suppose the products generated in the reaction of kinetic interest undergo conversion, on a time scale fast relative to the experimental manipulations, to thermodynamically more stable substances then the observed products will not be the actual products of the reaction. In this case the products are said to be under thermodynamic control rather than kinetic control. A possible example has been given in the earlier description of the reaction of hydroxide ion with ester, when it seems likely that the products are the carboxylic acid and the alkoxide ion, which, however, are transformed in accordance with the relative acidities of carboxylic acids and alcohols into the isolated products of carboxylate salt and alcohol. 

The reactivity of the methyl group in 4-methylcinnoline ethiodide indicates that the structure of this compound is 5, and this evidence has also been interpreted to mean that N-1 is the basic group in cinnolines. However, evidence of this type is only indicative since the formation of quaternary salts is subject to kinetic control, whereas protonation yields predominantly the thermodynamically more stable cation. The quinazoline cation has been shown to exist in the hydrated, resonance-stabilized form 6 7 by ultraviolet spectro-... 

In contrast to the results of the reaction of tertiary and secondary alkyl cations with carbon monoxide (Figs. 1-5), which were obtained under thermodynamically controlled conditions, the results of the carbonylation with the vinyl cations were obtained under kinetically controlled conditions. This presents a difficulty in explaining the occurrence of the 1,2-CH3 shift in the reaction 16->-17, because it involves a strong increase in energy. The exclusive formation of the Z-stereoisomer 18 on carbonylation of the 1,2-dimethylvinyl cation 16 is remarkable, but does not allow an unambiguous conclusion about the detailed structure— linear 19 or bent 20—of the vinyl cation. A non-classical structure 21 can be disregarded, however, because the attack... 

In comparing nucleophiles whose attacking atom is in the same row of the periodic table, nucleophilicity is approximately in order of basicity, though basicity is thermodynamically controlled and nucleophilicity is kinetically controlled. So an approximate order of nucleophilicity is NH2 >RO > OH > R2NH > ArO > NH3 > pyridine > F > H2O > CIO4, and another is R3C > R2N > RO > F (see Table 8.1). This type of correlation works best when the structures of the nucleophiles being compared are similar, as with a set of substituted phenoxides. Within such a series, linear relationships can often be established between nucleophilic rates and pAT values. 

In many cases, however, the silicas are formed under kinetic control,16 and not thermodynamic, resulting often in living materials that undergo structural modifications, and thus changes in reactivity, even months after preparation (Figure 5.5). 

Extensive studies have been carried out on the metal enediolates of carboxylic acids and the influence of substrate structure on kinetic aldol diastereoselection (eq. [26]). For all but the most sterically demanding substituents (Rj = t-C4H9, mesityl, 1-adamantyl) the condensations exhibit only modest threo diastereoselection (Table 13). The reader is referred to Table 4 for the analogous thermodynamically controlled aldol data. 

It has been demonstrated that organotin-mediated multiple carbohydrate esterifications can be controlled by the acytaring reagent and the solvent polarity. When acetyl chloride is used, the reactions are under thermodynamic control, whereas when acetic anhydride is employed, kinetic control takes place. Very good selectivity can furthermore be obtained in more polar solvents. These results can be used in the efficient preparation of prototype carbohydrate structures. 

Solid lines standard titration curves, broken lines manifold systematic variations, arrows direction of the induced relative shift. F s. 1 and 2 simulate structural changes in the ligand-free complexes. Figs 3-6 inhibition and activation processes induced by the controlling ligand (kinetic control). Figs 7 and 8 simulate a variation of the catalytic concentration (see Scheme 3.3-4) or of the constants of association of L to M (thermodynamic control). 

Enolates may be derived from a,/l-unsaturated ketones 16 by base-catalyzed proton abstraction. Under kinetic control the a -proton is abstracted and a cross-conjugated metal dienolate is formed, whereas under thermodynamic conditions the extended dienolate is the major product3,, l. Successful alkylations of dienolates derived from cyclic a,/l-unsaturated ketones have been performed (see Section 1.1.1.3.1.1.2.1.). The related a,/ -unsaturated ester systems have also been investigated22-24. Open-chain structures 16 pose a rather complicated... 

This review has tried to present an overview of the control of enzymic activity in complex polyatomic frameworks. The examples discussed are intended to be representative obviously many other examples could be cited. The elementary interactions involved in modulating enzymic activity are well understood in terms of thermodynamics, kinetics, and structure. A considerable amount of information is also available for the simplest type of macromolecular framework, enzymes consisting of a single polypeptide chain, although a considerable amount of work remains to be done. 

The major mechanistic and structural aspect of the acetalation process is its orientation toward derivatives obtained either under thermodynamically controlled conditions or under kinetically controlled conditions. We will not discuss here all structural factors concerning the relative stabilities of acyclic and cyclic acetals of polyols and monosaccharides, because such a discussion has been extensively reviewed and adequately commented on [8,10,12 -14]. However, it is important to focus here on the main consequences of these relative stabilities in relation to the various experimental conditions to orientate the choice of specific conditions, particularly for the most important monosaccharides (D-glucose, D-mannose, and D-galactose). 

---