Quasi-chemical theory example

We present a molecular theory of hydration that now makes possible a unification of these diverse views of the role of water in protein stabilization. The central element in our development is the potential distribution theorem. We discuss both its physical basis and statistical thermodynamic framework with applications to protein solution thermodynamics and protein folding in mind. To this end, we also derive an extension of the potential distribution theorem, the quasi-chemical theory, and propose its implementation to the hydration of folded and unfolded proteins. Our perspective and current optimism are justified by the understanding we have gained from successful applications of the potential distribution theorem to the hydration of simple solutes. A few examples are given to illustrate this point. 

As mentioned earlier, studies of simple linear surfactants in a solvent (i.e, those without any third component) allow one to examine the sufficiency of coarse-grained lattice models for predicting the aggregation behavior of micelles and to examine the limits of applicability of analytical lattice approximations such as quasi-chemical theory or self-consistent field theory (in the case of polymers). The results available from the simulations for the structure and shapes of micelles, the polydispersity, and the cmc show that the lattice approach can be used reliably to obtain such information qualitatively as well as quantitatively. The results are generally consistent with what one would expect from mass-action models and other theoretical techniques as well as from experiments. For example. Desplat and Care [31] report micellization results (the cmc and micellar size) for the surfactant h ti (for a temperature of = ksT/tts = /(-ts = 1-18 and... 

It would be desirable to apply analytical expressions for the activity coefficient, which are not only able to describe the concentration dependence, but also the temperature dependence correctly. Presently, there is no approach completely fulfilling this task. But the newer approaches, as for example, the Wilson [13], NRTL (nonrandom two liquid theory) [14], and UNIQUAC (universal quasi-chemical theory) equation [15] allow for an improved description of the real behavior of multicomponent systems from the information of the binary systems. These approaches are based on the concept of local composition, introduced by Wilson [13]. This concept assumes that the local composition is different from the overall composition because of the interacting forces. For this approach, different boundary cases can be distinguished ... 

More sophisticated models for have been developed from molecular principles. For example, the universal quasi-chemical theory, UNIQUAC, is an extension of the Wilson equation. It divides the excess Gibbs energy into two parts, one due to entropy, the combinatorial part, and one due to ener, the residual part ... 

It is helpful to contrast the view we adopt in this book with the perspective of Hill (1986). In that case, the normative example is some separable system such as the polyatomic ideal gas. Evaluation of a partition function for a small system is then the essential task of application of the model theory. Series expansions, such as a virial expansion, are exploited to evaluate corrections when necessary. Examples of that type fill out the concepts. In the present book, we establish and then exploit the potential distribution theorem. Evaluation of the same partition functions will still be required. But we won t stop with an assumption of separability. On the basis of the potential distribution theorem, we then formulate additional simplified low-dimensional partition function models to describe many-body effects. Quasi-chemical treatments are prototypes for those subsequent approximate models. Though the design of the subsequent calculation is often heuristic, the more basic development here focuses on theories for discovery of those model partition functions. These deeper theoretical tools are known in more esoteric settings, but haven t been used to fill out the picture we present here. 

The non-linear theory of steady-steady (quasi-steady-state/pseudo-steady-state) kinetics of complex catalytic reactions is developed. It is illustrated in detail by the example of the single-route reversible catalytic reaction. The theoretical framework is based on the concept of the kinetic polynomial which has been proposed by authors in 1980-1990s and recent results of the algebraic theory, i.e. an approach of hypergeometric functions introduced by Gel fand, Kapranov and Zelevinsky (1994) and more developed recently by Sturnfels (2000) and Passare and Tsikh (2004). The concept of ensemble of equilibrium subsystems introduced in our earlier papers (see in detail Lazman and Yablonskii, 1991) was used as a physico-chemical and mathematical tool, which generalizes the well-known concept of equilibrium step . In each equilibrium subsystem, (n—1) steps are considered to be under equilibrium conditions and one step is limiting n is a number of steps of the complex reaction). It was shown that all solutions of these equilibrium subsystems define coefficients of the kinetic polynomial. 

---