Quantum mechanics nuclear potential energy

Molecular mechanics is based on a ball-and-stick picture of a molecule, occasionally with some classical electrostatistics. Neither explicit consideration of electrons nor the quantum mechanical treatment of potential energy is made. (In quantum mechanics the potential energy is represented as a sum of the nuclear repulsion energy and the electronic energy obtained from an approximate solution to the Schrddinger equation.) The potential energy in this classical MM model is written as a superposition of various two-body, three-body, and four-body interactions. The potential energy is expressed as a sum of valence (or bonded), cross-valence, and nonbonded interactions ... 

From the standpoint of quantum mechanics, the potential energy surface (PES) arises from treating the nuclear variables of a collection of electrons and nuclei, formally described by the Schrodinger Coulomb Hamiltonian, as parameters rather than variables. The basis for this... 

Ia) is included in the electronic Hamiltonian since, as we shall see, its most important effects arise from interactions involving electronic motions. The interactions which arise from electron spin, 30(5 ), will be derived later from relativistic quantum mechanics for the moment electron spin is introduced in a purely phenomenological manner. The electron-electron and electron-nuclear potential energies are included in equation (2.36) and the purely nuclear electrostatic repulsion is in equation (2.37). The double prime superscripts have been dropped for the sake of simplicity. We remind ourselves that // in equation (2.37) is the reduced nuclear mass, M M2/(M + M2). 

The result is that, to a very good approxunation, as treated elsewhere in this Encyclopedia, the nuclei move in a mechanical potential created by the much more rapid motion of the electrons. The electron cloud itself is described by the quantum mechanical theory of electronic structure. Since the electronic and nuclear motion are approximately separable, the electron cloud can be described mathematically by the quantum mechanical theory of electronic structure, in a framework where the nuclei are fixed. The resulting Bom-Oppenlieimer potential energy surface (PES) created by the electrons is the mechanical potential in which the nuclei move. Wlien we speak of the internal motion of molecules, we therefore mean essentially the motion of the nuclei, which contain most of the mass, on the molecular potential energy surface, with the electron cloud rapidly adjusting to the relatively slow nuclear motion. 

Both the BO dynamics and Gaussian wavepacket methods described above in Section n separate the nuclear and electronic motion at the outset, and use the concept of potential energy surfaces. In what is generally known as the Ehrenfest dynamics method, the picture is still of semiclassical nuclei and quantum mechanical electrons, but in a fundamentally different approach the electronic wave function is propagated at the same time as the pseudoparticles. These are driven by standard classical equations of motion, with the force provided by an instantaneous potential energy function... 

The full quantum mechanical study of nuclear dynamics in molecules has received considerable attention in recent years. An important example of such developments is the work carried out on the prototypical systems H3 [1-5] and its isotopic variant HD2 [5-8], Li3 [9-12], Na3 [13,14], and HO2 [15-18], In particular, for the alkali metal trimers, the possibility of a conical intersection between the two lowest doublet potential energy surfaces introduces a complication that makes their theoretical study fairly challenging. Thus, alkali metal trimers have recently emerged as ideal systems to study molecular vibronic dynamics, especially the so-called geometric phase (GP) effect [13,19,20] (often referred to as the molecular Aharonov-Bohm effect [19] or Berry s phase effect [21]) for further discussion on this topic see [22-25], and references cited therein. The same features also turn out to be present in the case of HO2, and their exact treatment assumes even further complexity [18],... 

Molecular quantum mechanics finds the solution to a Schrodinger equation for an electronic Hamiltonian, Hgjg., that gives a total energy, Egjg(-(R) + V (R,R). Repeated solutions at different nuclear configurations, R, lead to some approximate potential energy sur-... 

A fully theoretical calculation of a potential energy surface must be a quantum mechanical calculation, and the mathematical difflculties associated with the method require that approximations be made. The first of these is the Bom-Oppenheimer approximation, which states that it is acceptable to uncouple the electronic and nuclear motions. This is a consequence of the great disparity in the masses of the electron and nuclei. Therefore, the calculation can proceed by fixing the location... 

If we want to calculate the potential energy curve, then we have to change the intemuclear separation and rework the electronic problem at the new A-B distance, as in the H2 calculation. Once again, should we be so interested, the nuclear problem can be studied by solving the appropriate nuclear Schrodinger equation. This is a full quantum-mechanical equation, not to be confused with the MM treatment. 

The concept of a potential energy surface has appeared in several chapters. Just to remind you, we make use of the Born-Oppenheimer approximation to separate the total (electron plus nuclear) wavefunction into a nuclear wavefunction and an electronic wavefunction. To calculate the electronic wavefunction, we regard the nuclei as being clamped in position. To calculate the nuclear wavefunction, we have to solve the relevant nuclear Schrddinger equation. The nuclei vibrate in the potential generated by the electrons. Don t confuse the nuclear Schrddinger equation (a quantum-mechanical treatment) with molecular mechanics (a classical treatment). 

Molecular mechanics force fields rest on four fundamental principles. The first principle is derived from the Bom-Oppenheimer approximation. Electrons have much lower mass than nuclei and move at much greater velocity. The velocity is sufficiently different that the nuclei can be considered stationary on a relative scale. In effect, the electronic and nuclear motions are uncoupled, and they can be treated separately. Unlike quantum mechanics, which is involved in determining the probability of electron distribution, molecular mechanics focuses instead on the location of the nuclei. Based on both theory and experiment, a set of equations are used to account for the electronic-nuclear attraction, nuclear-nuclear repulsion, and covalent bonding. Electrons are not directly taken into account, but they are considered indirectly or implicitly through the use of potential energy equations. This approach creates a mathematical model of molecular structures which is intuitively clear and readily available for fast computations. The set of equations and constants is defined as the force... 

At the same time that Heisenberg was formulating his approach to the helium system, Born and Oppenheimer indicated how to formulate a quantum mechanical description of molecules that justified approximations already in use in treatment of band spectra. The theory was worked out while Oppenheimer was resident in Gottingen and constituted his doctoral dissertation. Born and Oppenheimer justified why molecules could be regarded as essentially fixed particles insofar as the electronic motion was concerned, and they derived the "potential" energy function for the nuclear motion. This approximation was to become the "clamped-nucleus" approximation among quantum chemists in decades to come.36... 

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