Proton accepting centers

The relationships connecting bonding energies and distances between a proton and a proton-accepting center are well known for medium strength and strong... 

Each enzyme has a characteristic pH optimum at which its activity is at a maximum. In the range of this optimum essential proton-donating or proton-accepting groups in the active center of the enzyme are in the ionized state required for the enzyme to function. Outside this range, substrate binding is no longer possible, and at extreme pH values the enzyme may be irreversibly denatured. The pH optimum depends on the composition of the medium, the temperature, and the enzyme s stability in acid and alkaline environments. The pH stability does not necessarily coincide with the pH optimum of the reaction rate. 

It should be noted that the sense of asymmetric induction in the lithiation/ rearrangement of aziridines 274, 276, and 279 by treatment with s-butyllithium/ (-)-sparteine is opposite to that observed for the corresponding epoxides (i.e. removal of the proton occurs at the (S)-stereocenter) [102], If one accepts the proposed model to explain the selective abstraction of the proton at the (R) -stereo-center of an epoxide (Figure 5.1), then, from the large difference in steric bulk (and Lewis basicity) between an oxygen atom and a tosyl-protected nitrogen atom, it is obvious that this model cannot be applied to the analogous aziridines. 

Complexes 41 and 42 were characterized by their IR and H-NMR spectra, and 41 also by elemental analysis. Table III contains the pertinent spectral data. Noteworthy are the very low energy terminal carbonyl bands for 41 and 42 at 1864 cm-1 (hexane). The weak 7r-accepting abilities of PR3 (R = Et, Ph) allow the lone CO ligand to 77-backbond to the Ti(II) center to a much greater degree. The -NMR spectrum of 41 exhibited a doublet (/H-p = 1.5 Hz) at 8 4.75 due to the coupling of the cyclo-pentadienyl protons with the 31P nucleus, while complex 42 exhibited a broad cyclopentadienyl singlet at 8 4.67. 

Up to this point, we have dealt with the subject of acid-base chemistry in terms of proton transfer. If we seek to learn what it is that makes NH3 a base that can accept a proton, we find that it is because there is an unshared pair of electrons on the nitrogen atom where the proton can attach. Conversely, it is the fact that the hydrogen ion seeks a center of negative charge that makes it leave an acid such as HC1 and attach to the ammonia molecule. In other words, it is the presence of an unshared pair of electrons on the base that results in proton transfer. Sometimes known as the electronic theory of acids and bases, this shows that the essential characteristics of acids and bases do not always depend on the transfer of a proton. This approach to acid-base chemistry was first developed by G. N. Lewis in the 1920s. 

The aqueous cores of reverse micelles are of particular interest because of their analogy with the water pockets in bioaggregates and the active sites of enzymes. Moreover, enzymes solubilized in reverse micelles can exhibit an enhanced catalytic efficiency. Figure B4.3.1 shows a reverse micelle of bis(2-ethylhexyl)sulfosuccinate (AOT) in heptane with three naphthalenic fluorescent probes whose excited-state pK values are much lower than the ground-state pK (see Table 4.4) 2-naphthol (NOH), sodium 2-naphthol sulfonate (NSOH), potassium 2-naphthol-6,8-disulfonate (NSOH). The spectra and the rate constants for deprotonation and back-recombination (determined by time-resolved experiments) provide information on the location of the probes and the corresponding ability of their microenvironment to accept a proton , (i) NDSOH is located around the center of the water pool, and at water contents w = [H20]/[A0T] >... 

Increased understanding of reaction mechanisms in the 1940s and 1950s pinpointed general acid or base catalysis as likely to be of importance in many hydrolytic reactions. The imidazole nucleus in histidine was the obvious center in proteins to donate or accept protons at physiological pH. The involvement of histidine was shown by photochemical oxidation in the presence of methylene blue (Weil and Buchert, 1951) which destroyed histidine and tryptophan and inactivated chymotrypsin and trypsin. 

Protons are in general indispensable for the dismutation of superoxide (Eq. (4)). Also in the case of its dismutation catalyzed by a metal center, two protons are needed for the dissociation of the product (H2O2) from the metal center (Scheme 9). Therefore, a complex which can accept two protons upon reduction and release them upon oxidation is an excellent candidate for SOD activity. The studies on proton-coupled electron transfer in Fe- and Mn-SODs 48), demonstrated that the active site of MnSOD consists of more than one proton acceptor (Scheme 10). Since the assignment of species involved in proton transfer is extremely difficult in the case of enzymatic systems, relevant investigations on adequate model complexes could be of vast importance. H2dapsox coordinates to Fe(II) in its neutral form, whereas in the case of Fe(III) it coordinates in the dapsox form. Thus, oxidation and reduction of its iron complex is a proton-coupled electron transfer process 46), which as an energetically favorable... 

The finding that thiamine, and even simple thiazolium ring derivatives, can perform many reactions in the absence of the host apoenzyme has allowed detailed analyses of its chemistry [33, 34]. In 1958 Breslow first proposed a mechanism for thiamine catalysis to this day, this mechanism remains as the generally accepted model [35]. NMR deuterium exchange experiments were enlisted to show that the thiazolium C2-proton of thiamine was exchangeable, suggesting that a carbanion zwitterion could be formed at that center. This nucleophilic carbanion was proposed to interact with sites in the substrates. The thiazolium thus acts as an electron sink to stabilize a carbonyl carbanion generated by deprotonation of an aldehydic carbon or decarboxylation of an a-keto acid. The nucleophilic carbonyl equivalent could then react with other electro-... 

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